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ntng1a netrin g1a [ Danio rerio (zebrafish) ]

Gene ID: 569075, updated on 9-Dec-2024

Summary

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Official Symbol
ntng1aprovided by ZNC
Official Full Name
netrin g1aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-091118-13
See related
Ensembl:ENSDARG00000014973 AllianceGenome:ZFIN:ZDB-GENE-091118-13
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
ntng1; si:ch211-223f21.1
Summary
Predicted to be involved in animal organ morphogenesis; axonogenesis; and tissue development. Orthologous to human NTNG1 (netrin G1). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
human mouse all
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Genomic context

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See ntng1a in Genome Data Viewer
Location:
chromosome: 24
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (29362323..29526561)
105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (29461696..29538500)

Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137489291 Neighboring gene protein arginine methyltransferase 6 Neighboring gene vav guanine nucleotide exchange factor 3 Neighboring gene uncharacterized LOC101885749 Neighboring gene zgc:163022

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Rab11 promotes single Mauthner cell axon regeneration in vivo through axon guidance molecule Ntng2b. Yao H, et al. Exp Neurol, 2024 Apr. PMID 38325655
  2. Divergence of regulatory sequences in duplicated fish genes. Hellemont RV, et al. Genome Dyn, 2007. PMID 18753786
  3. Role of neurexin2a in lead-induced locomotor defect in developing zebrafish. Tu H, et al. Aquat Toxicol, 2018 Jan. PMID 29195096
  4. Expression of Protein-Coding Gene Orthologs in Zebrafish and Mouse Inner Ear Non-sensory Supporting Cells. Giffen KP, et al. Front Neurosci, 2019. PMID 31680844, Free PMC Article
  5. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
netrin-G1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007135.7 Reference GRCz11 Primary Assembly

    Range
    29362323..29526561
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021470354.2 → XP_021326029.1  netrin-G1 isoform X1

    UniProtKB/TrEMBL
    A0A8M3B6S1
    Conserved Domains (3) summary
    cd00054
    Location:475 → 499
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00055
    Location:421 → 468
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    pfam00055
    Location:69 → 296
    Laminin_N; Laminin N-terminal (Domain VI)

  2. XM_009297530.4 → XP_009295805.2  netrin-G1 isoform X2

    UniProtKB/TrEMBL
    A0A8M3APC3
    Conserved Domains (3) summary
    cd00054
    Location:454 → 478
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00055
    Location:400 → 447
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    pfam00055
    Location:69 → 296
    Laminin_N; Laminin N-terminal (Domain VI)

  3. XM_009297533.4 → XP_009295808.2  netrin-G1 isoform X9

    UniProtKB/TrEMBL
    A0A8M3ANP5
    Conserved Domains (3) summary
    cd00054
    Location:409 → 433
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00055
    Location:297 → 343
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    pfam00055
    Location:69 → 296
    Laminin_N; Laminin N-terminal (Domain VI)

  4. XM_009297531.4 → XP_009295806.2  netrin-G1 isoform X3

    UniProtKB/TrEMBL
    A0A8M3AZ83
    Conserved Domains (3) summary
    cd00054
    Location:453 → 477
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00055
    Location:399 → 446
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    pfam00055
    Location:69 → 296
    Laminin_N; Laminin N-terminal (Domain VI)

  5. XM_009297534.4 → XP_009295809.2  netrin-G1 isoform X10

    UniProtKB/TrEMBL
    A0A8M3B6S5
    Conserved Domains (3) summary
    cd00054
    Location:408 → 432
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00055
    Location:297 → 343
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    pfam00055
    Location:69 → 296
    Laminin_N; Laminin N-terminal (Domain VI)

  6. XM_021470356.2 → XP_021326031.1  netrin-G1 isoform X6

    UniProtKB/TrEMBL
    A0A8M9PUJ1
    Related
    ENSDARP00000145618.1, ENSDART00000193556.1
    Conserved Domains (3) summary
    cd00054
    Location:434 → 458
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00055
    Location:380 → 427
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    pfam00055
    Location:69 → 296
    Laminin_N; Laminin N-terminal (Domain VI)

  7. XM_009297537.4 → XP_009295812.2  netrin-G1 isoform X13

    UniProtKB/TrEMBL
    A0A8M3AW50
    Related
    ENSDARP00000152072.1, ENSDART00000188414.1
    Conserved Domains (3) summary
    cd00054
    Location:389 → 413
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00055
    Location:297 → 343
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    pfam00055
    Location:69 → 296
    Laminin_N; Laminin N-terminal (Domain VI)

  8. XM_009297532.4 → XP_009295807.2  netrin-G1 isoform X4

    UniProtKB/TrEMBL
    A0A8M3AW46
    Conserved Domains (3) summary
    cd00054
    Location:439 → 463
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00055
    Location:385 → 432
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    pfam00055
    Location:69 → 296
    Laminin_N; Laminin N-terminal (Domain VI)

  9. XM_009297535.4 → XP_009295810.2  netrin-G1 isoform X11

    UniProtKB/TrEMBL
    A0A8M3APC6
    Conserved Domains (3) summary
    cd00054
    Location:394 → 418
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00055
    Location:297 → 343
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    pfam00055
    Location:69 → 296
    Laminin_N; Laminin N-terminal (Domain VI)

  10. XM_017353916.3 → XP_017209405.2  netrin-G1 isoform X5

    UniProtKB/TrEMBL
    A0A8M6YVP9
    Conserved Domains (3) summary
    cd00054
    Location:438 → 462
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00055
    Location:384 → 431
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    pfam00055
    Location:69 → 296
    Laminin_N; Laminin N-terminal (Domain VI)

  11. XM_009297536.4 → XP_009295811.2  netrin-G1 isoform X12

    UniProtKB/TrEMBL
    A0A8M3AZ87
    Conserved Domains (3) summary
    cd00054
    Location:393 → 417
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00055
    Location:297 → 343
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    pfam00055
    Location:69 → 296
    Laminin_N; Laminin N-terminal (Domain VI)

  12. XM_009297529.4 → XP_009295804.2  netrin-G1 isoform X1

    UniProtKB/TrEMBL
    A0A8M3B6S1
    Conserved Domains (3) summary
    cd00054
    Location:475 → 499
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00055
    Location:421 → 468
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    pfam00055
    Location:69 → 296
    Laminin_N; Laminin N-terminal (Domain VI)

  13. XM_017353915.3 → XP_017209404.2  netrin-G1 isoform X7

    UniProtKB/TrEMBL
    A0A8M6Z4S4
    Conserved Domains (3) summary
    cd00054
    Location:430 → 454
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00055
    Location:297 → 343
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    pfam00055
    Location:69 → 296
    Laminin_N; Laminin N-terminal (Domain VI)

  14. XM_021470357.2 → XP_021326032.1  netrin-G1 isoform X8

    UniProtKB/TrEMBL
    A0A8M9P669
    Conserved Domains (3) summary
    cd00054
    Location:419 → 443
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00055
    Location:365 → 412
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    pfam00055
    Location:69 → 296
    Laminin_N; Laminin N-terminal (Domain VI)

  15. XM_021470358.2 → XP_021326033.1  netrin-G1 isoform X14

    UniProtKB/TrEMBL
    A0A8M9PGG9
    Conserved Domains (3) summary
    cd00054
    Location:374 → 398
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00055
    Location:297 → 343
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    pfam00055
    Location:69 → 296
    Laminin_N; Laminin N-terminal (Domain VI)

  16. XM_021470355.2 → XP_021326030.1  netrin-G1 isoform X1

    UniProtKB/TrEMBL
    A0A8M3B6S1
    Conserved Domains (3) summary
    cd00054
    Location:475 → 499
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00055
    Location:421 → 468
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    pfam00055
    Location:69 → 296
    Laminin_N; Laminin N-terminal (Domain VI)
Nucleotide Protein
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