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ydjc YdjC chitooligosaccharide deacetylase homolog [ Danio rerio (zebrafish) ]

Gene ID: 569036, updated on 9-Dec-2024

Summary

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Official Symbol
ydjcprovided by ZNC
Official Full Name
YdjC chitooligosaccharide deacetylase homologprovided by ZNC
Primary source
ZFIN:ZDB-GENE-060526-182
See related
Ensembl:ENSDARG00000062655 AllianceGenome:ZFIN:ZDB-GENE-060526-182
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:ch211-89f7.6
Summary
Predicted to enable magnesium ion binding activity. Predicted to act upstream of or within carbohydrate metabolic process. Orthologous to human YDJC (YdjC chitooligosaccharide deacetylase homolog). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
human mouse all
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Genomic context

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See ydjc in Genome Data Viewer
Location:
chromosome: 5
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (13324060..13337450)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (12823516..12835741)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene microRNA 130b Neighboring gene stromal cell-derived factor 2-like 1 Neighboring gene ubiquitin-conjugating enzyme E2L 3b Neighboring gene chemokine (C-C motif) ligand 19a, tandem duplicate 1 Neighboring gene chemokine (C-C motif) ligand 19a, tandem duplicate 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables deacetylase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEA
Inferred from Electronic Annotation
more info
  
enables magnesium ion binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
carbohydrate deacetylase
Names
UPF0249 protein ydjC homolog
YdjC homolog
NP_001076331.1
XP_005165107.1
XP_068077393.1
XP_068077394.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001082862.1 → NP_001076331.1  carbohydrate deacetylase

    See identical proteins and their annotated locations for NP_001076331.1

    Status: PROVISIONAL

    Source sequence(s)
    BX957246
    UniProtKB/Swiss-Prot
    A2BIR6
    Related
    ENSDARP00000085284.4, ENSDART00000090851.5
    Conserved Domains (1) summary
    cd10806
    Location:7 → 300
    YdjC_like_2; uncharacterized YdjC-like family proteins from eukaryotes

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    13324060..13337450
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005165050.5 → XP_005165107.1  carbohydrate deacetylase isoform X1

    See identical proteins and their annotated locations for XP_005165107.1

    UniProtKB/Swiss-Prot
    A2BIR6
    Conserved Domains (1) summary
    cd10806
    Location:7 → 300
    YdjC_like_2; uncharacterized YdjC-like family proteins from eukaryotes

  2. XM_068221293.1 → XP_068077394.1  carbohydrate deacetylase isoform X2

  3. XM_068221292.1 → XP_068077393.1  carbohydrate deacetylase isoform X1

    UniProtKB/Swiss-Prot
    A2BIR6
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A2BIR6.1 GenPept UniProtKB/Swiss-Prot:A2BIR6

Gene LinkOut

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Molecular Biology Databases
Research Materials