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si:ch211-284k5.2 si:ch211-284k5.2 [ Danio rerio (zebrafish) ]

Gene ID: 568832, updated on 4-Jan-2025

Summary

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Official Symbol
si:ch211-284k5.2provided by ZNC
Official Full Name
si:ch211-284k5.2provided by ZNC
Primary source
ZFIN:ZDB-GENE-131127-514
See related
Ensembl:ENSDARG00000101455 AllianceGenome:ZFIN:ZDB-GENE-131127-514
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Orthologous to several human genes including CFAP97D2 (CFAP97 domain containing 2). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
all
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Genomic context

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See si:ch211-284k5.2 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (1035795..1040857)
105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (953664..958726)

Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101886811 Neighboring gene zinc finger protein 609a Neighboring gene neuronal acetylcholine receptor subunit alpha-7 Neighboring gene SPG11 vesicle trafficking associated, spatacsin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
sperm axonemal maintenance protein CFAP97D1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007136.7 Reference GRCz11 Primary Assembly

    Range
    1035795..1040857
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_692188.4 → XP_697280.2  sperm axonemal maintenance protein CFAP97D1 isoform X1

    UniProtKB/TrEMBL
    A0A0R4IW21, A0A8N7TFL7
    Related
    ENSDARP00000138586.1, ENSDART00000168637.2
    Conserved Domains (1) summary
    pfam13879
    Location:28 → 123
    KIAA1430; KIAA1430 homologue

  2. XM_005174216.3 → XP_005174273.1  sperm axonemal maintenance protein CFAP97D1 isoform X2

    UniProtKB/TrEMBL
    A0A2R8QD25, A0A8M2BLU7
    Related
    ENSDARP00000149640.1, ENSDART00000179843.1
    Conserved Domains (1) summary
    pfam13879
    Location:28 → 123
    KIAA1430; KIAA1430 homologue
Nucleotide Protein
Heading Accession and Version

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