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si:ch211-14a17.10 si:ch211-14a17.10 [ Danio rerio (zebrafish) ]

Gene ID: 567822, updated on 27-Dec-2024

Summary

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Official Symbol
si:ch211-14a17.10provided by ZNC
Official Full Name
si:ch211-14a17.10provided by ZNC
Primary source
ZFIN:ZDB-GENE-030616-581
See related
AllianceGenome:ZFIN:ZDB-GENE-030616-581
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:zc14a17.10
Orthologs
all
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Genomic context

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See si:ch211-14a17.10 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
25
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (38231803..38246672, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (38249364..38288923, complement)

Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene apoptotic chromatin condensation inducer 1a Neighboring gene si:ch211-14a17.11 Neighboring gene myosin-6-like Neighboring gene uncharacterized LOC137487479

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
putative leucine-rich repeat-containing protein DDB_G0290503; uncharacterized protein si:ch211-14a17.10
Names
paramyosin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007113.7 Reference GRCz11 Primary Assembly

    Range
    38231803..38246672 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021467792.2 → XP_021323467.1  uncharacterized protein si:ch211-14a17.10 isoform X1

    UniProtKB/TrEMBL
    A0A8M9P1B7
    Conserved Domains (2) summary
    cl02614
    Location:655 → 825
    SPRY; SPRY domain
    cl25732
    Location:324 → 634
    SMC_N; RecF/RecN/SMC N terminal domain

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394506.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    276386..297810 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021471259.2 → XP_021326934.2  putative leucine-rich repeat-containing protein DDB_G0290503 isoform X2

    UniProtKB/TrEMBL
    A0A8M9PPZ9
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials