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igsf21b immunoglobin superfamily, member 21b [ Danio rerio (zebrafish) ]

Gene ID: 567714, updated on 4-Jan-2025

Summary

Official Symbol
igsf21bprovided by ZNC
Official Full Name
immunoglobin superfamily, member 21bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-070424-59
See related
Ensembl:ENSDARG00000056084 AllianceGenome:ZFIN:ZDB-GENE-070424-59
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:162186
Summary
Is expressed in central nervous system and retina. Orthologous to human IGSF21 (immunoglobin superfamily member 21). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
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Genomic context

See igsf21b in Genome Data Viewer
Location:
chromosome: 23
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (21638264..21661916)
105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (21711713..21735365)

Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene regulator of chromosome condensation 2 Neighboring gene Rho guanine nucleotide exchange factor (GEF) 10-like b Neighboring gene dehydrogenase/reductase (SDR family) member 3a Neighboring gene uncharacterized LOC110438321

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General protein information

Preferred Names
immunoglobulin superfamily member 21b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001110473.1NP_001103943.1  immunoglobulin superfamily member 21b precursor

    See identical proteins and their annotated locations for NP_001103943.1

    Status: PROVISIONAL

    Source sequence(s)
    CU458945
    Related
    ENSDARP00000094963.4, ENSDART00000104188.5
    Conserved Domains (2) summary
    smart00410
    Location:32136
    IG_like; Immunoglobulin like
    cl11960
    Location:372435
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007134.7 Reference GRCz11 Primary Assembly

    Range
    21638264..21661916
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017353589.2XP_017209078.1  immunoglobulin superfamily member 21b isoform X1

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395145.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    154035..178350
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)