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si:ch211-288g17.3 si:ch211-288g17.3 [ Danio rerio (zebrafish) ]

Gene ID: 567638, updated on 4-Jan-2025

Summary

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Official Symbol
si:ch211-288g17.3provided by ZNC
Official Full Name
si:ch211-288g17.3provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-461
See related
Ensembl:ENSDARG00000070959 AllianceGenome:ZFIN:ZDB-GENE-030131-461
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
wu:fb22a04; wu:fb33e03; wu:fi72f12
Summary
Predicted to enable DNA binding activity. [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
all
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Genomic context

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See si:ch211-288g17.3 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (9455259..9460323)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (9536300..9541397)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103909205 Neighboring gene microRNA let7d-2 Neighboring gene microRNA 125a-2 Neighboring gene vesicle associated membrane protein 1a Neighboring gene intermediate filament family orphan 1a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Single-cell analyses identify distinct and intermediate states of zebrafish pancreatic islet development. Lu CJ, et al. J Mol Cell Biol, 2019 Jun 1. PMID 30407522, Free PMC Article
  2. Dynamics of zebrafish fin regeneration using a pulsed SILAC approach. Nolte H, et al. Proteomics, 2015 Feb. PMID 25504979
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
chromosomal protein D1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    9455259..9460323
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_701324.10 → XP_706416.1  chromosomal protein D1

    UniProtKB/TrEMBL
    A0A8N7T8I4, A3KPI6
    Related
    ENSDARP00000118910.2, ENSDART00000139385.3
    Conserved Domains (1) summary
    PHA03247
    Location:7 → 271
    PHA03247; large tegument protein UL36; Provisional
Nucleotide Protein Strain
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