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si:ch211-262i1.5 si:ch211-262i1.5 [ Danio rerio (zebrafish) ]

Gene ID: 567573, updated on 9-Dec-2024

Summary

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Official Symbol
si:ch211-262i1.5provided by ZNC
Official Full Name
si:ch211-262i1.5provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-3152
See related
Ensembl:ENSDARG00000070059 AllianceGenome:ZFIN:ZDB-GENE-030131-3152
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fc28f08; wu:fc28f08
Summary
Predicted to enable DNA binding activity and metal ion binding activity. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See si:ch211-262i1.5 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (14312259..14319063)
105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (14254575..14261329)

Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene si:ch211-262i1.4 Neighboring gene si:ch211-262i1.2 Neighboring gene polypyrimidine tract binding protein 1b Neighboring gene family with sequence similarity 174 member C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. The THAP domain of THAP1 is a large C2CH module with zinc-dependent sequence-specific DNA-binding activity. Clouaire T, et al. Proc Natl Acad Sci U S A, 2005 May 10. PMID 15863623, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein si:ch211-262i1.5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007122.7 Reference GRCz11 Primary Assembly

    Range
    14312259..14319063
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021479951.2 → XP_021335626.1  uncharacterized protein si:ch211-262i1.5

    UniProtKB/TrEMBL
    A0A8M9PVW1, A0A8M9QIF0, E7EZT8
    Related
    ENSDARP00000093294.3, ENSDART00000102518.5
    Conserved Domains (3) summary
    pfam05485
    Location:19 → 97
    THAP; THAP domain
    pfam13613
    Location:241 → 291
    HTH_Tnp_4; Helix-turn-helix of DDE superfamily endonuclease
    cl21562
    Location:319 → 446
    DDE_Tnp_4; DDE superfamily endonuclease

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394806.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    222571..229357
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_690871.8 → XP_695963.3  uncharacterized protein si:ch211-262i1.5

    UniProtKB/TrEMBL
    A0A8M9Q3Q6, A0A8N7T7U7
    Conserved Domains (3) summary
    pfam05485
    Location:19 → 97
    THAP; THAP domain
    pfam13613
    Location:241 → 291
    HTH_Tnp_4; Helix-turn-helix of DDE superfamily endonuclease
    cl21562
    Location:319 → 446
    DDE_Tnp_4; DDE superfamily endonuclease
Nucleotide Protein Strain
Heading Accession and Version

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