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si:dkey-1h4.4 si:dkey-1h4.4 [ Danio rerio (zebrafish) ]

Gene ID: 566734, updated on 28-Oct-2024

Summary

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Official Symbol
si:dkey-1h4.4provided by ZNC
Official Full Name
si:dkey-1h4.4provided by ZNC
Primary source
ZFIN:ZDB-GENE-160728-41
See related
Ensembl:ENSDARG00000105548 AllianceGenome:ZFIN:ZDB-GENE-160728-41
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
all
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Genomic context

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See si:dkey-1h4.4 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (30926275..30930493)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (30654911..30658672)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene amyloid beta (A4) precursor protein-binding, family A, member 2b Neighboring gene telomere repeat binding bouquet formation protein 2 Neighboring gene sorbitol dehydrogenase Neighboring gene tight junction protein 1a Neighboring gene family with sequence similarity 189 member A1 Neighboring gene uncharacterized LOC103911386

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein si:dkey-1h4.4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    30926275..30930493
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021477858.2 → XP_021333533.1  uncharacterized protein si:dkey-1h4.4

    UniProtKB/TrEMBL
    A0A1D5NS87, A0A8M9Q2H2
    Related
    ENSDARP00000142697.1, ENSDART00000173518.2
    Conserved Domains (2) summary
    COG4886
    Location:32 → 238
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:16 → 34
    LRR_RI; leucine-rich repeat [structural motif]
Nucleotide Protein
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Gene LinkOut

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Molecular Biology Databases
Research Materials