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zgc:153345 zgc:153345 [ Danio rerio (zebrafish) ]

Gene ID: 566129, updated on 9-Dec-2024

Summary

Official Symbol
zgc:153345provided by ZNC
Official Full Name
zgc:153345provided by ZNC
Primary source
ZFIN:ZDB-GENE-061103-487
See related
Ensembl:ENSDARG00000055622 AllianceGenome:ZFIN:ZDB-GENE-061103-487
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable GTPase activator activity. Predicted to act upstream of or within signal transduction. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
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Genomic context

See zgc:153345 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (33393829..33403522)
105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (33449969..33459662)

Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene malate dehydrogenase 2, NAD (mitochondrial) Neighboring gene microRNA 301a-1 Neighboring gene microRNA 130a-1 Neighboring gene spindle and kinetochore associated complex subunit 2 Neighboring gene uncharacterized LOC137496526 Neighboring gene ryanodine receptor 1a (skeletal) Neighboring gene interleukin 2 receptor, gamma a

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Clone Names

  • MGC153345

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables GTPase activator activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within signal transduction IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
uncharacterized protein LOC566129

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001077613.2NP_001071081.2  uncharacterized protein LOC566129

    Status: VALIDATED

    Source sequence(s)
    BX088525
    UniProtKB/TrEMBL
    A0A0R4IRT8, A0A8N1YXS7
    Related
    ENSDARP00000138086.2, ENSDART00000163458.2
    Conserved Domains (1) summary
    cl02570
    Location:53263
    RhoGAP; RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when ...

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007121.7 Reference GRCz11 Primary Assembly

    Range
    33393829..33403522
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)