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ccdc117 coiled-coil domain containing 117 [ Danio rerio (zebrafish) ]

Gene ID: 566053, updated on 4-Jan-2025

Summary

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Official Symbol
ccdc117provided by ZNC
Official Full Name
coiled-coil domain containing 117provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-1001
See related
Ensembl:ENSDARG00000091872 AllianceGenome:ZFIN:ZDB-GENE-030131-1001
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fb55e05; wu:fb55e05; si:ch211-102c2.7
Summary
Orthologous to human CCDC117 (coiled-coil domain containing 117). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
human mouse all
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Genomic context

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See ccdc117 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (26786969..26795448, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (26186816..26195295, complement)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene si:ch211-102c2.8 Neighboring gene ring finger protein 181 Neighboring gene transcobalamin II Neighboring gene RAB, member RAS oncogene family-like 6b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
coiled-coil domain-containing protein 117

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001123279.2 → NP_001116751.1  coiled-coil domain-containing protein 117

    Status: VALIDATED

    Source sequence(s)
    CU041374, EH445898
    UniProtKB/TrEMBL
    A0A8M1NG58, F2Z4X0
    Related
    ENSDARP00000121330.1, ENSDART00000146124.2
    Conserved Domains (1) summary
    pfam15810
    Location:141 → 268
    CCDC117; Coiled-coil domain-containing protein 117

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    26786969..26795448 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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