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larp6b La ribonucleoprotein 6, translational regulator b [ Danio rerio (zebrafish) ]

Gene ID: 565767, updated on 9-Dec-2024

Summary

Official Symbol
larp6bprovided by ZNC
Official Full Name
La ribonucleoprotein 6, translational regulator bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-041008-244
See related
Ensembl:ENSDARG00000003968 AllianceGenome:ZFIN:ZDB-GENE-041008-244
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
im:7142825; wu:fa55b04; zgc:162969
Summary
Predicted to enable mRNA binding activity. Predicted to act upstream of or within RNA processing. Predicted to be part of ribonucleoprotein complex. Predicted to be active in nucleus. Orthologous to human LARP6 (La ribonucleoprotein 6, translational regulator). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
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Genomic context

See larp6b in Genome Data Viewer
Location:
chromosome: 11
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (6446235..6452467, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (6436396..6442628, complement)

Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene vimentin-type intermediate filament-associated coiled-coil protein-like Neighboring gene NADH:ubiquinone oxidoreductase subunit A11 Neighboring gene uncharacterized LOC137496668 Neighboring gene vimentin type intermediate filament associated coiled-coil protein Neighboring gene uncharacterized LOC137496635 Neighboring gene growth arrest and DNA-damage-inducible, beta a

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within RNA processing IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
la-related protein 6b
Names
La ribonucleoprotein domain family, member 6
La ribonucleoprotein domain family, member 6b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001089408.1NP_001082877.1  la-related protein 6b

    See identical proteins and their annotated locations for NP_001082877.1

    Status: PROVISIONAL

    Source sequence(s)
    BC134173
    UniProtKB/TrEMBL
    A3KP60
    Related
    ENSDARP00000019822.6, ENSDART00000004483.8
    Conserved Domains (3) summary
    cd08033
    Location:62138
    LARP_6; La RNA-binding domain of La-related protein 6
    pfam12901
    Location:445459
    SUZ-C; SUZ-C motif
    cl17169
    Location:153261
    RRM_SF; RNA recognition motif (RRM) superfamily

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007122.7 Reference GRCz11 Primary Assembly

    Range
    6446235..6452467 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)