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irgq1 immunity-related GTPase family, q1 [ Danio rerio (zebrafish) ]

Gene ID: 565312, updated on 9-Dec-2024

Summary

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Official Symbol
irgq1provided by ZNC
Official Full Name
immunity-related GTPase family, q1provided by ZNC
Primary source
ZFIN:ZDB-GENE-051212-3
See related
Ensembl:ENSDARG00000086847 AllianceGenome:ZFIN:ZDB-GENE-051212-3
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable GTP binding activity. Predicted to be located in membrane. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See irgq1 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (25806408..25812946)
105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (25891373..25897015)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene BCL3 transcription coactivator Neighboring gene uncharacterized LOC137487904 Neighboring gene Cbl proto-oncogene C, E3 ubiquitin protein ligase Neighboring gene uncharacterized LOC103908931 Neighboring gene interferon-inducible GTPase 5-like Neighboring gene immunity-related GTPase family, e4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. The interferon-inducible p47 (IRG) GTPases in vertebrates: loss of the cell autonomous resistance mechanism in the human lineage. Bekpen C, et al. Genome Biol, 2005. PMID 16277747, Free PMC Article
  2. The role of gamma interferon in innate immunity in the zebrafish embryo. Sieger D, et al. Dis Model Mech, 2009 Nov-Dec. PMID 19779068
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
interferon gamma induced GTPase; uncharacterized protein irgq1
Names
immunity-related GTPase family, cinema 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    25806408..25812946
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_688591.9 → XP_693683.6  uncharacterized protein irgq1

    UniProtKB/TrEMBL
    A0A8N7UR59, X1WE34
    Related
    ENSDARP00000128485.1, ENSDART00000154652.2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Research Materials