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LMJF_07_0470 hypothetical protein [ Leishmania major strain Friedlin ]

Gene ID: 5649204, updated on 30-Oct-2024

Summary

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Gene symbol
LMJF_07_0470
Gene description
hypothetical protein
Locus tag
LMJF_07_0470
Gene type
protein coding
RNA name
conserved hypothetical protein
RefSeq status
PROVISIONAL
Organism
Leishmania major strain Friedlin (strain: Friedlin)
Lineage
Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania
Orthologs
all
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Genomic context

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See LMJF_07_0470 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
1
Sequence:
Chromosome: 7; NC_007248.2 (205658..208081, complement)

Chromosome 7 - NC_007248.2Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene putative acyl-CoA dehydrogenase, mitochondrial precursor Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_007248.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the kinetoplastid parasite, Leishmania major. Ivens AC, et al. Science, 2005 Jul 15. PMID 16020728, Free PMC Article
  2. Chromosome and gene copy number variation allow major structural change between species and strains of Leishmania. Rogers MB, et al. Genome Res, 2011 Dec. PMID 22038252, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables U3 snoRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribosome biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of preribosome, small subunit precursor IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_007248.2 Reference assembly

    Range
    205658..208081 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001680900.1 → XP_001680952.1  conserved hypothetical protein [Leishmania major strain Friedlin]

    See identical proteins and their annotated locations for XP_001680952.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    Q4QIP6
    Conserved Domains (3) summary
    smart00785
    Location:277 → 349
    AARP2CN; AARP2CN (NUC121) domain
    COG5177
    Location:27 → 784
    COG5177; Uncharacterized conserved protein [Function unknown]
    pfam04950
    Location:496 → 782
    RIBIOP_C; 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal
Nucleotide Protein
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