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arhgap35b Rho GTPase activating protein 35b [ Danio rerio (zebrafish) ]

Gene ID: 564565, updated on 9-Dec-2024

Summary

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Official Symbol
arhgap35bprovided by ZNC
Official Full Name
Rho GTPase activating protein 35bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-060526-44
See related
Ensembl:ENSDARG00000060297 AllianceGenome:ZFIN:ZDB-GENE-060526-44
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
arhgap35; si:ch211-139a5.8
Summary
Predicted to enable GTPase activator activity. Predicted to be involved in Rho protein signal transduction; regulation of axonogenesis; and regulation of cell size. Predicted to act upstream of or within signal transduction. Predicted to be active in cytosol. Orthologous to human ARHGAP35 (Rho GTPase activating protein 35). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See arhgap35b in Genome Data Viewer
Location:
chromosome: 5
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (37864703..37881301, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (37264550..37281304, complement)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene pannexin 1b Neighboring gene preproinsulin Neighboring gene FXYD domain containing ion transport regulator 2 Neighboring gene transmembrane serine protease 13b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. The p190 RhoGAPs, ARHGAP35, and ARHGAP5 are implicated in GnRH neuronal development: Evidence from patients with idiopathic hypogonadotropic hypogonadism, zebrafish, and in vitro GAP activity assay. Lippincott MF, et al. Genet Med, 2022 Dec. PMID 36178483, Free PMC Article
  2. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
  
enables GTPase activator activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables GTPase activator activity IEA
Inferred from Electronic Annotation
more info
  
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
  
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in Rho protein signal transduction IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in regulation of axonogenesis IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in regulation of cell size IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within signal transduction IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
Rho GTPase activating protein 35b; rho GTPase-activating protein 35

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    37864703..37881301 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021476553.2 → XP_021332228.1  rho GTPase-activating protein 35

    UniProtKB/TrEMBL
    A0A8M1RIM7, A5PF53, F1R0X6
    Related
    ENSDARP00000079254.4, ENSDART00000084819.5
    Conserved Domains (5) summary
    smart00441
    Location:431 → 483
    FF; Contains two conserved F residues
    cd00882
    Location:29 → 245
    Ras_like_GTPase; Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)
    cd04373
    Location:1262 → 1446
    RhoGAP_p190; RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and ...
    pfam16512
    Location:261 → 340
    RhoGAP-FF1; p190-A and -B Rho GAPs FF domain
    cl27030
    Location:158 → 247
    Ras; Ras family

  2. XM_021476554.2 → XP_021332229.1  rho GTPase-activating protein 35

    UniProtKB/TrEMBL
    A0A8M1RIM7, A5PF53, F1R0X6
    Conserved Domains (5) summary
    smart00441
    Location:431 → 483
    FF; Contains two conserved F residues
    cd00882
    Location:29 → 245
    Ras_like_GTPase; Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)
    cd04373
    Location:1262 → 1446
    RhoGAP_p190; RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and ...
    pfam16512
    Location:261 → 340
    RhoGAP-FF1; p190-A and -B Rho GAPs FF domain
    cl27030
    Location:158 → 247
    Ras; Ras family

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394596.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    28613..45211 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003198643.6 → XP_003198691.2  rho GTPase-activating protein 35

    See identical proteins and their annotated locations for XP_003198691.2

    UniProtKB/TrEMBL
    A0A8M1RIM7, A5PF53, F1R0X6
    Conserved Domains (5) summary
    smart00441
    Location:431 → 483
    FF; Contains two conserved F residues
    cd00882
    Location:29 → 245
    Ras_like_GTPase; Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)
    cd04373
    Location:1262 → 1446
    RhoGAP_p190; RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and ...
    pfam16512
    Location:261 → 340
    RhoGAP-FF1; p190-A and -B Rho GAPs FF domain
    cl27030
    Location:158 → 247
    Ras; Ras family

  2. XM_009301690.4 → XP_009299965.1  rho GTPase-activating protein 35

    See identical proteins and their annotated locations for XP_009299965.1

    UniProtKB/TrEMBL
    A0A8M1RIM7, A5PF53, F1R0X6
    Conserved Domains (5) summary
    smart00441
    Location:431 → 483
    FF; Contains two conserved F residues
    cd00882
    Location:29 → 245
    Ras_like_GTPase; Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)
    cd04373
    Location:1262 → 1446
    RhoGAP_p190; RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and ...
    pfam16512
    Location:261 → 340
    RhoGAP-FF1; p190-A and -B Rho GAPs FF domain
    cl27030
    Location:158 → 247
    Ras; Ras family

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001082843.1: Suppressed sequence

    Description
    NM_001082843.1: This RefSeq was temporarily suppressed because currently there are not sufficient data to support this transcript.
Nucleotide Protein Strain
Heading Accession and Version

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