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mfsd12b major facilitator superfamily domain containing 12b [ Danio rerio (zebrafish) ]

Gene ID: 564425, updated on 9-Dec-2024

Summary

Official Symbol
mfsd12bprovided by ZNC
Official Full Name
major facilitator superfamily domain containing 12bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-080305-1
See related
Ensembl:ENSDARG00000032077 AllianceGenome:ZFIN:ZDB-GENE-080305-1
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
gb:ck025016; si:rp71-24n4.3
Summary
Predicted to enable symporter activity. Predicted to act upstream of or within carbohydrate transport. Predicted to be located in membrane. Orthologous to human MFSD12 (major facilitator superfamily domain containing 12). [provided by Alliance of Genome Resources, Dec 2024]
Annotation information
Annotation category: suggests misassembly
Orthologs
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Genomic context

See mfsd12b in Genome Data Viewer
Location:
chromosome: 8
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (20564867..20580541)
105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (20532635..20548464)

Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene casein kinase 1, gamma 2b Neighboring gene diencephalon/mesencephalon homeobox 2 Neighboring gene nuclear factor I/C Neighboring gene small integral membrane protein 24

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables symporter activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within carbohydrate transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
major facilitator superfamily domain containing 12b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001423440.1NP_001410369.1  major facilitator superfamily domain containing 12b

    Status: VALIDATED

    Source sequence(s)
    CR394564
    UniProtKB/TrEMBL
    A0A8M1QVI8, A0A8M9PZC8
    Related
    ENSDART00000143028.3

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007119.7 Reference GRCz11 Primary Assembly

    Range
    20564867..20580541
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394719.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    77841..93319
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)