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si:ch211-126c2.4 si:ch211-126c2.4 [ Danio rerio (zebrafish) ]

Gene ID: 563788, updated on 3-Dec-2024

Summary

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Official Symbol
si:ch211-126c2.4provided by ZNC
Official Full Name
si:ch211-126c2.4provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-3087
See related
Ensembl:ENSDARG00000105479 AllianceGenome:ZFIN:ZDB-GENE-030131-3087
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fc26g07; wu:fc26g07
Orthologs
all
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Genomic context

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See si:ch211-126c2.4 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (30898882..30918699, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (30558568..30578382, complement)

Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene ubiquitin-like 3b Neighboring gene solute carrier family 7 member 3b Neighboring gene forkhead box O4 Neighboring gene sestrin 4 Neighboring gene si:ch211-191o15.6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
uncharacterized protein PF3D7_1120600

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007125.7 Reference GRCz11 Primary Assembly

    Range
    30898882..30918699 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068213360.1 → XP_068069461.1  uncharacterized protein PF3D7_1120600 isoform X6

  2. XM_068213359.1 → XP_068069460.1  uncharacterized protein PF3D7_1120600 isoform X5

  3. XM_068213356.1 → XP_068069457.1  uncharacterized protein PF3D7_1120600 isoform X2

    Related
    ENSDARP00000143863.1, ENSDART00000176631.2

  4. XM_068213355.1 → XP_068069456.1  uncharacterized protein PF3D7_1120600 isoform X1

  5. XM_068213362.1 → XP_068069463.1  uncharacterized protein PF3D7_1120600 isoform X8

    UniProtKB/TrEMBL
    A0A2R8RM09, A0A8M9PZR5

  6. XM_021481192.2 → XP_021336867.1  uncharacterized protein PF3D7_1120600 isoform X8

    UniProtKB/TrEMBL
    A0A2R8RM09, A0A8M9PZR5
    Related
    ENSDARP00000148345.1, ENSDART00000186441.1
    Conserved Domains (1) summary
    cl26464
    Location:706 → 864
    Atrophin-1; Atrophin-1 family

  7. XM_068213361.1 → XP_068069462.1  uncharacterized protein PF3D7_1120600 isoform X7

  8. XM_068213358.1 → XP_068069459.1  uncharacterized protein PF3D7_1120600 isoform X4

    UniProtKB/TrEMBL
    A0A140LFS1, A0A8M9QL01
    Related
    ENSDARP00000142095.1, ENSDART00000173451.2

  9. XM_021481191.2 → XP_021336866.1  uncharacterized protein PF3D7_1120600 isoform X4

    UniProtKB/TrEMBL
    A0A140LFS1, A0A8M9QL01
    Related
    ENSDARP00000155284.1, ENSDART00000183543.1
    Conserved Domains (1) summary
    cl26464
    Location:680 → 850
    Atrophin-1; Atrophin-1 family

  10. XM_068213357.1 → XP_068069458.1  uncharacterized protein PF3D7_1120600 isoform X3

Nucleotide Protein
Heading Accession and Version

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