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tmcc1b transmembrane and coiled-coil domain family 1b [ Danio rerio (zebrafish) ]

Gene ID: 563581, updated on 9-Dec-2024

Summary

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Official Symbol
tmcc1bprovided by ZNC
Official Full Name
transmembrane and coiled-coil domain family 1bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-061013-154
See related
Ensembl:ENSDARG00000060954 AllianceGenome:ZFIN:ZDB-GENE-061013-154
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:153972
Summary
Predicted to be located in membrane. Predicted to be active in endomembrane system. Orthologous to human TMCC1 (transmembrane and coiled-coil domain family 1). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See tmcc1b in Genome Data Viewer
Location:
chromosome: 11
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (18202463..18244570)
105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (18029345..18075068, complement)

Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100538023 Neighboring gene uncharacterized LOC100334068 Neighboring gene musculoskeletal, embryonic nuclear protein 1b Neighboring gene uncharacterized LOC563780 Neighboring gene STIM activating enhance

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in endomembrane system IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
transmembrane and coiled-coil domains protein 1b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001080008.1 → NP_001073477.1  transmembrane and coiled-coil domains protein 1b

    See identical proteins and their annotated locations for NP_001073477.1

    Status: PROVISIONAL

    Source sequence(s)
    BC124781
    UniProtKB/TrEMBL
    A0A8M6Z929, Q08BC7
    Related
    ENSDARP00000080872.4, ENSDART00000086437.6
    Conserved Domains (1) summary
    pfam10267
    Location:241 → 641
    Tmemb_cc2; Predicted transmembrane and coiled-coil 2 protein

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007122.7 Reference GRCz11 Primary Assembly

    Range
    18202463..18244570
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068224193.1 → XP_068080294.1  transmembrane and coiled-coil domains protein 1b isoform X1

    UniProtKB/TrEMBL
    A0A8M6Z929, Q08BC7

  2. XM_068224194.1 → XP_068080295.1  transmembrane and coiled-coil domains protein 1b isoform X2

  3. XM_005172858.5 → XP_005172915.1  transmembrane and coiled-coil domains protein 1b isoform X1

    See identical proteins and their annotated locations for XP_005172915.1

    UniProtKB/TrEMBL
    A0A8M6Z929, Q08BC7
    Related
    ENSDARP00000144551.1, ENSDART00000175559.2
    Conserved Domains (1) summary
    pfam10267
    Location:241 → 641
    Tmemb_cc2; Predicted transmembrane and coiled-coil 2 protein

  4. XM_068224196.1 → XP_068080297.1  transmembrane and coiled-coil domains protein 1b isoform X4

  5. XM_005172861.5 → XP_005172918.1  transmembrane and coiled-coil domains protein 1b isoform X3

    UniProtKB/TrEMBL
    A0A8M6Z126
    Conserved Domains (1) summary
    pfam10267
    Location:118 → 518
    Tmemb_cc2; Predicted transmembrane and coiled-coil 2 protein

  6. XM_021479640.2 → XP_021335315.1  transmembrane and coiled-coil domains protein 1b isoform X1

    UniProtKB/TrEMBL
    A0A8M6Z929, Q08BC7
    Conserved Domains (1) summary
    pfam10267
    Location:241 → 641
    Tmemb_cc2; Predicted transmembrane and coiled-coil 2 protein

  7. XM_017358243.3 → XP_017213732.1  transmembrane and coiled-coil domains protein 1b isoform X3

    UniProtKB/TrEMBL
    A0A8M6Z126
    Conserved Domains (1) summary
    pfam10267
    Location:118 → 518
    Tmemb_cc2; Predicted transmembrane and coiled-coil 2 protein

  8. XM_017358241.3 → XP_017213730.1  transmembrane and coiled-coil domains protein 1b isoform X1

    UniProtKB/TrEMBL
    A0A8M6Z929, Q08BC7
    Conserved Domains (1) summary
    pfam10267
    Location:241 → 641
    Tmemb_cc2; Predicted transmembrane and coiled-coil 2 protein

  9. XM_005172859.5 → XP_005172916.1  transmembrane and coiled-coil domains protein 1b isoform X1

    See identical proteins and their annotated locations for XP_005172916.1

    UniProtKB/TrEMBL
    A0A8M6Z929, Q08BC7
    Conserved Domains (1) summary
    pfam10267
    Location:241 → 641
    Tmemb_cc2; Predicted transmembrane and coiled-coil 2 protein

  10. XM_009300579.3 → XP_009298854.1  transmembrane and coiled-coil domains protein 1b isoform X1

    See identical proteins and their annotated locations for XP_009298854.1

    UniProtKB/TrEMBL
    A0A8M6Z929, Q08BC7
    Conserved Domains (1) summary
    pfam10267
    Location:241 → 641
    Tmemb_cc2; Predicted transmembrane and coiled-coil 2 protein

  11. XM_068224195.1 → XP_068080296.1  transmembrane and coiled-coil domains protein 1b isoform X2

  12. XM_005172860.5 → XP_005172917.1  transmembrane and coiled-coil domains protein 1b isoform X1

    See identical proteins and their annotated locations for XP_005172917.1

    UniProtKB/TrEMBL
    A0A8M6Z929, Q08BC7
    Conserved Domains (1) summary
    pfam10267
    Location:241 → 641
    Tmemb_cc2; Predicted transmembrane and coiled-coil 2 protein

RNA

  1. XR_011017121.1 RNA Sequence

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394814.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    139752..167918
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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