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si:ch211-195b21.5 si:ch211-195b21.5 [ Danio rerio (zebrafish) ]

Gene ID: 563381, updated on 12-Sep-2024

Summary

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Official Symbol
si:ch211-195b21.5provided by ZNC
Official Full Name
si:ch211-195b21.5provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-954
See related
Ensembl:ENSDARG00000117464 AllianceGenome:ZFIN:ZDB-GENE-030131-954
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fb54a03; wu:fb54a03
Orthologs
all
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Genomic context

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See si:ch211-195b21.5 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (23222290..23233022)
105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (23202249..23212998)

Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene RAS guanyl releasing protein 3 (calcium and DAG-regulated) Neighboring gene family with sequence similarity 98 member A Neighboring gene TBC1 domain family, member 12a Neighboring gene D(1)-like dopamine receptor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. A Toolbox for Efficient Proximity-Dependent Biotinylation in Zebrafish Embryos. Rosenthal SM, et al. Mol Cell Proteomics, 2021. PMID 34332124, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

General protein information

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Preferred Names
E3 ubiquitin-protein ligase RBBP6; NK-tumor recognition protein; uncharacterized protein LOC563381

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007128.7 Reference GRCz11 Primary Assembly

    Range
    23222290..23233022
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001922576.6 → XP_001922611.1  E3 ubiquitin-protein ligase RBBP6

    UniProtKB/TrEMBL
    A0A8M9PSP0
    Related
    ENSDART00000194760.1

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394988.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    244489..256824
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021473150.1 → XP_021328825.1  NK-tumor recognition protein

    UniProtKB/TrEMBL
    A0A8M9Q6L6

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395330.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    122182..132914
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021474368.2 → XP_021330043.1  E3 ubiquitin-protein ligase RBBP6

    UniProtKB/TrEMBL
    A0A8M9PSP0
Nucleotide Protein
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