U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

si:dkey-92i17.2 si:dkey-92i17.2 [ Danio rerio (zebrafish) ]

Gene ID: 563325, updated on 4-Jan-2025

Summary

Go to the top of the page Help
Official Symbol
si:dkey-92i17.2provided by ZNC
Official Full Name
si:dkey-92i17.2provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-6759
See related
Ensembl:ENSDARG00000093612 AllianceGenome:ZFIN:ZDB-GENE-030131-6759
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fa04d06; wu:fa04d06
Summary
Predicted to be active in nucleoplasm. [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See si:dkey-92i17.2 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (10607446..10617971, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (10301432..10311983, complement)

Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene P2Y receptor family member 10 Neighboring gene G protein-coupled receptor 174 Neighboring gene nucleoporin 62 like Neighboring gene ATRX chromatin remodeler

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
is_active_in nucleoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
coiled-coil domain-containing protein 106

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007125.7 Reference GRCz11 Primary Assembly

    Range
    10607446..10617971 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021481121.2 → XP_021336796.1  coiled-coil domain-containing protein 106 isoform X2

    UniProtKB/TrEMBL
    A0A8M9QBC5, A0A8M9QKU7
    Conserved Domains (1) summary
    pfam15794
    Location:216 → 429
    CCDC106; Coiled-coil domain-containing protein 106

  2. XM_021481120.2 → XP_021336795.1  coiled-coil domain-containing protein 106 isoform X1

    UniProtKB/TrEMBL
    A0A8M9PZI8, A0A8M9QPC1, E9QE99
    Related
    ENSDARP00000114776.1, ENSDART00000136649.4
    Conserved Domains (1) summary
    pfam15794
    Location:234 → 447
    CCDC106; Coiled-coil domain-containing protein 106

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394895.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    203295..214428 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021472755.2 → XP_021328430.1  coiled-coil domain-containing protein 106 isoform X2

    UniProtKB/TrEMBL
    A0A8M9PBJ9, A0A8M9Q550
    Conserved Domains (1) summary
    pfam15794
    Location:216 → 429
    CCDC106; Coiled-coil domain-containing protein 106

  2. XM_021472754.2 → XP_021328429.1  coiled-coil domain-containing protein 106 isoform X1

    UniProtKB/TrEMBL
    A0A8M9PU96, A0A8M9Q1C9
    Conserved Domains (1) summary
    pfam15794
    Location:234 → 447
    CCDC106; Coiled-coil domain-containing protein 106

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395312.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    123031..133261 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017359092.3 → XP_017214581.2  coiled-coil domain-containing protein 106 isoform X2

    UniProtKB/TrEMBL
    A0A8M6Z2Q1, A0A8M9QBC5
    Conserved Domains (1) summary
    pfam15794
    Location:216 → 429
    CCDC106; Coiled-coil domain-containing protein 106

  2. XM_002664317.6 → XP_002664363.3  coiled-coil domain-containing protein 106 isoform X1

    UniProtKB/TrEMBL
    A0A8M1RKM6, A0A8M9PZI8
    Conserved Domains (1) summary
    pfam15794
    Location:234 → 447
    CCDC106; Coiled-coil domain-containing protein 106
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools