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si:dkey-7c18.24 si:dkey-7c18.24 [ Danio rerio (zebrafish) ]

Gene ID: 562950, updated on 12-Sep-2024

Summary

Official Symbol
si:dkey-7c18.24provided by ZNC
Official Full Name
si:dkey-7c18.24provided by ZNC
Primary source
ZFIN:ZDB-GENE-041014-63
See related
Ensembl:ENSDARG00000041433 AllianceGenome:ZFIN:ZDB-GENE-041014-63
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
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Genomic context

See si:dkey-7c18.24 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (46040666..46043405)
105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (46136946..46139685)

Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110438197 Neighboring gene uncharacterized LOC137488591 Neighboring gene si:ch211-213i16.3 Neighboring gene trace amine associated receptor 12j Neighboring gene trace amine associated receptor 12h

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General protein information

Preferred Names
uncharacterized protein LOC562950

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001082832.1NP_001076301.1  uncharacterized protein LOC562950

    Status: PREDICTED

    Source sequence(s)
    AL929507
    UniProtKB/TrEMBL
    A0A8M1NC07, Q5QNN6
    Related
    ENSDARP00000060743.4, ENSDART00000060744.6

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007131.7 Reference GRCz11 Primary Assembly

    Range
    46040666..46043405
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395076.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    167854..170593
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395345.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    24835..27574
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)