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olfml3b olfactomedin-like 3b [ Danio rerio (zebrafish) ]

Gene ID: 562022, updated on 9-Dec-2024

Summary

Official Symbol
olfml3bprovided by ZNC
Official Full Name
olfactomedin-like 3bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-050302-161
See related
Ensembl:ENSDARG00000062171 AllianceGenome:ZFIN:ZDB-GENE-050302-161
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
olfml3; olfml3a; wu:fb02c05; wu:fl19d05; zgc:153815; wu:faa48g10
Summary
Predicted to be involved in signal transduction. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Orthologous to human OLFML3 (olfactomedin like 3). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
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Genomic context

See olfml3b in Genome Data Viewer
Location:
chromosome: 11
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (24671687..24681292, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (24434071..24443676, complement)

Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137496697 Neighboring gene synaptotagmin VIb Neighboring gene uncharacterized LOC137496698 Neighboring gene uncharacterized LOC101886928 Neighboring gene G protein-coupled receptor 25

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in signal transduction IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
olfactomedin-like protein 3A
Names
olfactomedin-like 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001077251.1NP_001070719.1  olfactomedin-like protein 3A precursor

    See identical proteins and their annotated locations for NP_001070719.1

    Status: PROVISIONAL

    Source sequence(s)
    BC124742
    UniProtKB/Swiss-Prot
    Q08BF8, Q29RB4
    Related
    ENSDARP00000084034.3, ENSDART00000089601.5
    Conserved Domains (2) summary
    TIGR04375
    Location:18107
    cyano_w_EgtBD; hercynine metabolism protein
    pfam02191
    Location:135378
    OLF; Olfactomedin-like domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007122.7 Reference GRCz11 Primary Assembly

    Range
    24671687..24681292 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394820.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    174380..183924 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)