si:ch211-59o9.10 si:ch211-59o9.10 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: si:ch211-59o9.10provided by ZNC
Official Full Name: si:ch211-59o9.10provided by ZNC
Primary source: ZFIN:ZDB-GENE-101206-1
See related: Ensembl:ENSDARG00000089967 AllianceGenome:ZFIN:ZDB-GENE-101206-1
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fb39e10; wu:fb39e10
Summary: Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in positive regulation of DNA-templated transcription; protein ubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: all
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Genomic context

See si:ch211-59o9.10 in Genome Data Viewer

Location:: chromosome: 25

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	25	NC_007136.7 (19560640..19574120, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	25	NC_007136.6 (19462721..19476169, complement)

Chromosome 25 - NC_007136.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fb39e10 (e-PCR)
- UniSTS:187177

Grik1 (e-PCR), detects polymorphism
- UniSTS:546807

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables ubiquitin protein ligase activity	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in positive regulation of DNA-templated transcription	IBA Inferred from Biological aspect of Ancestor more info
involved_in protein ubiquitination	IBA Inferred from Biological aspect of Ancestor more info
involved_in ubiquitin-dependent protein catabolic process	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: uncharacterized protein LOC561841

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001365354.1 → NP_001352283.1 uncharacterized protein LOC561841

Status: VALIDATED

Source sequence(s)

CR385081

UniProtKB/TrEMBL

A0A8M1QKU8, E7F6I4

Related

ENSDARP00000129621.1, ENSDART00000156811.2

Conserved Domains (1) summary

cl17238
Location:423 → 464

RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain