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golph3b golgi phosphoprotein 3b [ Danio rerio (zebrafish) ]

Gene ID: 561662, updated on 9-Dec-2024

Summary

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Official Symbol
golph3bprovided by ZNC
Official Full Name
golgi phosphoprotein 3bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-091117-10
See related
Ensembl:ENSDARG00000044225 AllianceGenome:ZFIN:ZDB-GENE-091117-10
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:dkey-27b3.2
Summary
Predicted to enable phosphatidylinositol-4-phosphate binding activity. Predicted to be involved in Golgi organization and Golgi vesicle transport. Predicted to be located in Golgi cisterna membrane. Predicted to be active in Golgi cisterna; cytosol; and trans-Golgi network. Orthologous to human GOLPH3 (golgi phosphoprotein 3). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See golph3b in Genome Data Viewer
Location:
chromosome: 10
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (8659360..8672784, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (8825646..8839264, complement)

Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103911723 Neighboring gene phorbol-12-myristate-13-acetate-induced protein 1 Neighboring gene uncharacterized LOC137490366 Neighboring gene ISL LIM homeobox 1b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables phosphatidylinositol-4-phosphate binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables phosphatidylinositol-4-phosphate binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in Golgi organization IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in Golgi to plasma membrane protein transport IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in Golgi vesicle budding IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in Golgi cisterna IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in trans-Golgi network IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
Golgi phosphoprotein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007121.7 Reference GRCz11 Primary Assembly

    Range
    8659360..8672784 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021479254.2 → XP_021334929.1  Golgi phosphoprotein 3

    UniProtKB/TrEMBL
    A0A8M9QCA1, E7FGM1
    Related
    ENSDARP00000075209.4, ENSDART00000080763.5
    Conserved Domains (1) summary
    pfam05719
    Location:58 → 278
    GPP34; Golgi phosphoprotein 3 (GPP34)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394768.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    9..12248 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021472219.2 → XP_021327894.1  Golgi phosphoprotein 3

    UniProtKB/TrEMBL
    A0A8M9QCA1, E7FGM1
    Conserved Domains (1) summary
    pfam05719
    Location:58 → 278
    GPP34; Golgi phosphoprotein 3 (GPP34)
Nucleotide Protein Strain
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