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plxnb2a.3 plexin b2a, tandem duplicate 3 [ Danio rerio (zebrafish) ]

Gene ID: 561237, updated on 9-Dec-2024

Summary

Official Symbol
plxnb2a.3provided by ZNC
Official Full Name
plexin b2a, tandem duplicate 3provided by ZNC
Primary source
ZFIN:ZDB-GENE-041210-121
See related
Ensembl:ENSDARG00000079892 AllianceGenome:ZFIN:ZDB-GENE-041210-121
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:dkey-183c2.4
Summary
Predicted to enable semaphorin receptor activity. Predicted to be involved in anatomical structure morphogenesis; cell development; and neurogenesis. Predicted to act upstream of or within semaphorin-plexin signaling pathway. Predicted to be located in membrane. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
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Genomic context

See plxnb2a.3 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (14644076..14666726, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (14645321..14667918, complement)

Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene plexin b2a, tandem duplicate 1 Neighboring gene plexin b2a, tandem duplicate 2 Neighboring gene uncharacterized LOC137491532 Neighboring gene ATP-binding cassette, sub-family C (CFTR/MRP), member 9 Neighboring gene potassium inwardly rectifying channel subfamily J member 8

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables semaphorin receptor activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in anatomical structure morphogenesis IEA
Inferred from Electronic Annotation
more info
 
involved_in cell development IEA
Inferred from Electronic Annotation
more info
 
involved_in neurogenesis IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within semaphorin-plexin signaling pathway IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
uncharacterized protein LOC561237

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001030156.2NP_001025327.1  uncharacterized protein LOC561237 precursor

    Status: PREDICTED

    Source sequence(s)
    BX571719
    UniProtKB/TrEMBL
    A0A8M1N789, Q5RH90
    Related
    ENSDARP00000113132.1, ENSDART00000145737.2
    Conserved Domains (2) summary
    pfam01437
    Location:490533
    PSI; Plexin repeat
    cl15693
    Location:26488
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007115.7 Reference GRCz11 Primary Assembly

    Range
    14644076..14666726 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005164708.5XP_005164765.1  uncharacterized protein LOC561237 isoform X1

    UniProtKB/TrEMBL
    A0A8M2BBU5
    Conserved Domains (2) summary
    pfam01437
    Location:522565
    PSI; Plexin repeat
    cl15693
    Location:58520
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins