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si:ch73-127m5.2 si:ch73-127m5.2 [ Danio rerio (zebrafish) ]

Gene ID: 561202, updated on 12-Sep-2024

Summary

Official Symbol
si:ch73-127m5.2provided by ZNC
Official Full Name
si:ch73-127m5.2provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-1052
See related
Ensembl:ENSDARG00000096797 AllianceGenome:ZFIN:ZDB-GENE-030131-1052
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fb58c05; fd36a04; wu:fb58c05; wu:fd36a04
Orthologs
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Genomic context

See si:ch73-127m5.2 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (35098915..35105705, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (34997852..35004642, complement)

Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC798089 Neighboring gene si:dkey-21e13.3 Neighboring gene synaptotagmin XV Neighboring gene si:ch73-127m5.1 Neighboring gene cannabinoid receptor 2-like Neighboring gene N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2b

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General protein information

Preferred Names
uncharacterized protein LOC561202

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001278598.1NP_001265527.1  uncharacterized protein LOC561202

    Status: VALIDATED

    Source sequence(s)
    CU459210
    UniProtKB/TrEMBL
    A0A8M1P400, U3JAG2
    Related
    ENSDARP00000127230.1, ENSDART00000153034.2
    Conserved Domains (1) summary
    pfam03299
    Location:144306
    TF_AP-2; Transcription factor AP-2

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007123.7 Reference GRCz11 Primary Assembly

    Range
    35098915..35105705 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)