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zc3h3 zinc finger CCCH-type containing 3 [ Danio rerio (zebrafish) ]

Gene ID: 561182, updated on 4-Jan-2025

Summary

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Official Symbol
zc3h3provided by ZNC
Official Full Name
zinc finger CCCH-type containing 3provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-9399
See related
Ensembl:ENSDARG00000090751 AllianceGenome:ZFIN:ZDB-GENE-030131-9399
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fj68a07; wu:fj68a07
Summary
Predicted to enable metal ion binding activity. Predicted to be active in nucleus. Orthologous to human ZC3H3 (zinc finger CCCH-type containing 3). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
human mouse all
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Genomic context

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See zc3h3 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (32717438..32834083, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (32732748..32849403, complement)

Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137495884 Neighboring gene MAF bZIP transcription factor Aa Neighboring gene cylindromatosis (turban tumor syndrome), like Neighboring gene growth hormone releasing hormone receptor b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
zinc finger CCCH domain-containing protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007117.7 Reference GRCz11 Primary Assembly

    Range
    32717438..32834083 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_684588.6 → XP_689680.3  zinc finger CCCH domain-containing protein 3

    UniProtKB/TrEMBL
    A0A8N7TB21, E7FH07
    Related
    ENSDARP00000105060.1, ENSDART00000129803.4
    Conserved Domains (2) summary
    smart00356
    Location:776 → 802
    ZnF_C3H1; zinc finger
    pfam00642
    Location:699 → 720
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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