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jazf1a JAZF zinc finger 1a [ Danio rerio (zebrafish) ]

Gene ID: 561144, updated on 4-Jan-2025

Summary

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Official Symbol
jazf1aprovided by ZNC
Official Full Name
JAZF zinc finger 1aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-060503-492
See related
Ensembl:ENSDARG00000102551 AllianceGenome:ZFIN:ZDB-GENE-060503-492
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:ch211-204j16.1
Summary
Predicted to enable metal ion binding activity. Predicted to be active in nucleus. Orthologous to human JAZF1 (JAZF zinc finger 1). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
all
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Genomic context

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See jazf1a in Genome Data Viewer
Location:
chromosome: 19
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (19512278..19545581)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (19936197..19972476)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene TLR4 interactor with leucine-rich repeats Neighboring gene cAMP responsive element binding protein 5a Neighboring gene Tax1 (human T-cell leukemia virus type I) binding protein 1a Neighboring gene 3-hydroxyisobutyrate dehydrogenase a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
juxtaposed with another zinc finger protein 1a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001044955.1 → NP_001038420.1  juxtaposed with another zinc finger protein 1a

    Status: PROVISIONAL

    Source sequence(s)
    BX601646
    UniProtKB/TrEMBL
    A0A8M1N9M9
    Related
    ENSDARP00000153927.1, ENSDART00000180065.1
    Conserved Domains (1) summary
    pfam16159
    Location:9 → 50
    FOXP-CC; FOXP coiled-coil domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    19512278..19545581
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005159518.5 → XP_005159575.1  juxtaposed with another zinc finger protein 1a isoform X1

    UniProtKB/TrEMBL
    A0A0R4IVX5, A0A8M2B6F5
    Related
    ENSDARP00000139743.1, ENSDART00000172410.2
    Conserved Domains (1) summary
    pfam16159
    Location:68 → 111
    FOXP-CC; FOXP coiled-coil domain
Nucleotide Protein
Heading Accession and Version

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