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ankrd28b ankyrin repeat domain 28b [ Danio rerio (zebrafish) ]

Gene ID: 560747, updated on 9-Dec-2024

Summary

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Official Symbol
ankrd28bprovided by ZNC
Official Full Name
ankyrin repeat domain 28bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-070622-4
See related
Ensembl:ENSDARG00000009023 AllianceGenome:ZFIN:ZDB-GENE-070622-4
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
ankrd28
Summary
Orthologous to human ANKRD28 (ankyrin repeat domain 28). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
human mouse all
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Genomic context

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See ankrd28b in Genome Data Viewer
Location:
chromosome: 16
Exon count:
29
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (20055853..20152735)
105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (20249932..20346914)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene histone deacetylase 9b Neighboring gene aryl hydrocarbon receptor 1a Neighboring gene chromosome 16 C2orf66 homolog Neighboring gene 2-hydroxyacyl-CoA lyase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Interaction of infectious spleen and kidney necrosis virus ORF119L with PINCH leads to dominant-negative inhibition of integrin-linked kinase and cardiovascular defects in zebrafish. Yuan JM, et al. J Virol, 2015 Jan. PMID 25355883, Free PMC Article
  2. Many genes in fish have species-specific asymmetric rates of molecular evolution. Steinke D, et al. BMC Genomics, 2006 Feb 8. PMID 16466575, Free PMC Article
  3. The SARS-CoV-2 receptor and other key components of the Renin-Angiotensin-Aldosterone System related to COVID-19 are expressed in enterocytes in larval zebrafish. Postlethwait JH, et al. Biol Open, 2021 Mar 23. PMID 33757938, Free PMC Article
  4. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
  5. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A
Names
ankyrin repeat domain 28

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    20055853..20152735
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009292265.4 → XP_009290540.1  serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A

    UniProtKB/TrEMBL
    A0A8M3B1M1, E9QBZ2, F1QEZ4
    Related
    ENSDARP00000020838.7, ENSDART00000027020.9
    Conserved Domains (6) summary
    cd00204
    Location:134 → 259
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam00023
    Location:42 → 72
    Ank; Ankyrin repeat
    pfam12796
    Location:177 → 269
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:686 → 735
    Ank_4; Ankyrin repeats (many copies)
    pfam13857
    Location:258 → 312
    Ank_5; Ankyrin repeats (many copies)
    sd00045
    Location:140 → 170
    ANK; ANK repeat [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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