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wu:fa19b12 wu:fa19b12 [ Danio rerio (zebrafish) ]

Gene ID: 560551, updated on 3-Dec-2024

Summary

Official Symbol
wu:fa19b12provided by ZNC
Official Full Name
wu:fa19b12provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-5231
See related
Ensembl:ENSDARG00000105278 AllianceGenome:ZFIN:ZDB-GENE-030131-5231
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fa19b12
Orthologs
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Genomic context

See wu:fa19b12 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (25311274..25314752)
105 previous assembly GRCz10 (GCF_000002035.5) Unplaced Scaffold NW_003334369.1 (36068..39548, complement)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103910306 Neighboring gene carnosine N-methyltransferase 1 Neighboring gene transient receptor potential cation channel, subfamily M, member 6 Neighboring gene uncharacterized LOC110439811 Neighboring gene RAR-related orphan receptor B

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General protein information

Preferred Names
uncharacterized protein LOC560551

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001281985.1NP_001268914.1  uncharacterized protein LOC560551

    Status: VALIDATED

    Source sequence(s)
    EH486517, EH512912
    UniProtKB/TrEMBL
    A0A0R4IRB0, A0A8M1P052
    Related
    ENSDARP00000137060.1, ENSDART00000169638.2
    Conserved Domains (1) summary
    pfam15017
    Location:127154
    AF1Q; Drug resistance and apoptosis regulator

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    25311274..25314752
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068221222.1XP_068077323.1  uncharacterized protein LOC560551 isoform X1

    UniProtKB/TrEMBL
    A0A0R4IRB0, A0A8M1P052

RNA

  1. XR_224841.3 RNA Sequence

  2. XR_011015320.1 RNA Sequence