btbd10a BTB (POZ) domain containing 10a [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: btbd10aprovided by ZNC
Official Full Name: BTB (POZ) domain containing 10aprovided by ZNC
Primary source: ZFIN:ZDB-GENE-070410-41
See related: Ensembl:ENSDARG00000062674 AllianceGenome:ZFIN:ZDB-GENE-070410-41
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:162220
Summary: Predicted to be involved in phosphatidylinositol 3-kinase/protein kinase B signal transduction. Predicted to be active in cytoplasm. Orthologous to human BTBD10 (BTB domain containing 10). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 25

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	25	NC_007136.7 (17862338..17892830)
105	previous assembly	GRCz10 (GCF_000002035.5)	25	NC_007136.6 (17765937..17796337)

Chromosome 25 - NC_007136.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: BTB/POZ domain-containing protein 10a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001347897.1 → NP_001334826.1 BTB/POZ domain-containing protein 10a

Status: VALIDATED

Source sequence(s)

CR759966, CT033838

UniProtKB/TrEMBL

A0A8M1PAQ2, A4IG48

Related

ENSDARP00000126445.1, ENSDART00000151853.3

RNA

NR_144779.1 RNA Sequence

Status: VALIDATED

Source sequence(s)

CR759966, CT033838

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007136.7 Reference GRCz11 Primary Assembly

Range

17862338..17892830

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_005163018.5 → XP_005163075.1 BTB/POZ domain-containing protein 10a isoform X1

UniProtKB/TrEMBL

A0A8M2BAC2

Conserved Domains (2) summary

smart00225
Location:165 → 253

BTB; Broad-Complex, Tramtrack and Bric a brac

pfam16017
Location:197 → 426

BTB_3; BTB/POZ domain

RNA

XR_223121.5 RNA Sequence

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

NM_001110459.1: Suppressed sequence

Description

NM_001110459.1: This RefSeq was removed because it is a nonsense-mediated mRNA decay (NMD) candidate.