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si:ch211-98n17.5 si:ch211-98n17.5 [ Danio rerio (zebrafish) ]

Gene ID: 560439, updated on 4-Jan-2025

Summary

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Official Symbol
si:ch211-98n17.5provided by ZNC
Official Full Name
si:ch211-98n17.5provided by ZNC
Primary source
ZFIN:ZDB-GENE-160728-87
See related
Ensembl:ENSDARG00000105641 AllianceGenome:ZFIN:ZDB-GENE-160728-87
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fb50h02; wu:fb50h02
Summary
Predicted to be located in membrane. Orthologous to human MUC15 (mucin 15, cell surface associated). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
all
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Genomic context

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See si:ch211-98n17.5 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (34256513..34265481, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (33985405..33999001, complement)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene timeless interacting protein Neighboring gene DIS3 like exosome 3'-5' exoribonuclease Neighboring gene fin bud initiation factor b Neighboring gene butyrobetaine (gamma), 2-oxoglutarate dioxygenase (gamma-butyrobetaine hydroxylase) 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
serine-rich 25 kDa antigen protein; uncharacterized protein si:ch211-98n17.5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    34256513..34265481 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021477875.2 → XP_021333550.1  serine-rich 25 kDa antigen protein

    UniProtKB/TrEMBL
    A0A1D5NS46, A0A8M9QHU0
    Related
    ENSDARP00000142655.1, ENSDART00000173596.2
    Conserved Domains (1) summary
    pfam15672
    Location:72 → 328
    Mucin15; Cell-membrane associated Mucin15

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394698.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    221804..230831 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021471992.2 → XP_021327667.1  uncharacterized protein si:ch211-98n17.5

    UniProtKB/TrEMBL
    A0A2R8Q219, A0A8M9P9Q6
    Conserved Domains (1) summary
    pfam15672
    Location:72 → 328
    Mucin15; Cell-membrane associated Mucin15
Nucleotide Protein Strain
Heading Accession and Version

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