U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

si:dkeyp-74b6.2 si:dkeyp-74b6.2 [ Danio rerio (zebrafish) ]

Gene ID: 560359, updated on 9-Dec-2024

Summary

Go to the top of the page Help
Official Symbol
si:dkeyp-74b6.2provided by ZNC
Official Full Name
si:dkeyp-74b6.2provided by ZNC
Primary source
ZFIN:ZDB-GENE-160113-86
See related
Ensembl:ENSDARG00000115070 AllianceGenome:ZFIN:ZDB-GENE-160113-86
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to be involved in maintenance of synapse structure. Predicted to be active in glutamatergic synapse and synaptic cleft. Orthologous to human CBLN3 (cerebellin 3 precursor). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See si:dkeyp-74b6.2 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (1307529..1317448)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (1152607..1159082)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene macrophage mannose receptor 1 Neighboring gene uncharacterized LOC137496112 Neighboring gene receptor-interacting serine-threonine kinase 3 Neighboring gene KH and NYN domain containing

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in maintenance of synapse structure IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in glutamatergic synapse IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in synaptic cleft IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
cerebellin-1
Names
cerebellin-1-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    1307529..1317448
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_683765.7 → XP_688857.3  cerebellin-1

    UniProtKB/TrEMBL
    A0A2R8QR93, A0A8N7UV56
    Related
    ENSDARP00000157440.1, ENSDART00000189868.1
    Conserved Domains (1) summary
    cl23878
    Location:56 → 194
    C1q; C1q domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools