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dcaf5 ddb1 and cul4 associated factor 5 [ Danio rerio (zebrafish) ]

Gene ID: 560257, updated on 9-Dec-2024

Summary

Official Symbol
dcaf5provided by ZNC
Official Full Name
ddb1 and cul4 associated factor 5provided by ZNC
Primary source
ZFIN:ZDB-GENE-060929-808
See related
Ensembl:ENSDARG00000060320 AllianceGenome:ZFIN:ZDB-GENE-060929-808
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
wdr22; zgc:153934
Summary
Predicted to be involved in negative regulation of fatty acid biosynthetic process. Predicted to be located in nucleus. Predicted to be part of Cul4-RING E3 ubiquitin ligase complex. Predicted to be active in cytoplasm. Orthologous to human DCAF5 (DDB1 and CUL4 associated factor 5). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
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Genomic context

See dcaf5 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (36409313..36438909, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (36283481..36313077, complement)

Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene cytochrome c oxidase assembly factor COX16 Neighboring gene actinin, alpha 1 Neighboring gene phosphofurin acidic cluster sorting protein 2 Neighboring gene serine and arginine rich splicing factor 5a

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Clone Names

  • MGC153934

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
part_of Cul4-RING E3 ubiquitin ligase complex  
is_active_in cytoplasm  
located_in nucleus  

General protein information

Preferred Names
DDB1- and CUL4-associated factor 5
Names
WD repeat domain 22

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001077552.1 → NP_001071020.1  DDB1- and CUL4-associated factor 5

    See identical proteins and their annotated locations for NP_001071020.1

    Status: PROVISIONAL

    Source sequence(s)
    BC124494
    UniProtKB/TrEMBL
    A0A8M1NBS5, Q08BZ1
    Related
    ENSDARP00000079302.4, ENSDART00000084867.7
    Conserved Domains (3) summary
    COG2319
    Location:47 → 396
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:103 → 138
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:49 → 359
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007124.7 Reference GRCz11 Primary Assembly

    Range
    36409313..36438909 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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