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limd2 LIM domain containing 2 [ Danio rerio (zebrafish) ]

Gene ID: 560139, updated on 4-Jan-2025

Summary

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Official Symbol
limd2provided by ZNC
Official Full Name
LIM domain containing 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-120906-1
See related
Ensembl:ENSDARG00000078092 AllianceGenome:ZFIN:ZDB-GENE-120906-1
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable metal ion binding activity. Orthologous to human LIMD2 (LIM domain containing 2). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
human mouse all
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Genomic context

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See limd2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (31848140..31875159, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (31717446..31743424, complement)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene glial fibrillary acidic protein Neighboring gene mitogen-activated protein kinase kinase kinase 3 Neighboring gene zona pellucida glycoprotein 3e Neighboring gene DEAD (Asp-Glu-Ala-Asp) box helicase 42

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Proteome dynamics in neutrophils of adult zebrafish upon chemically-induced inflammation. Singh SK, et al. Fish Shellfish Immunol, 2014 Sep. PMID 25014315
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
LIM domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001328061.1 → NP_001314990.1  LIM domain-containing protein 2

    Status: VALIDATED

    Source sequence(s)
    BX324157
    UniProtKB/TrEMBL
    A0A8M1P3H5, X1WG15
    Related
    ENSDARP00000129170.1, ENSDART00000155298.2
    Conserved Domains (1) summary
    cd09486
    Location:27 → 79
    LIM_Eplin_like_1; a LIM domain subfamily on a group of proteins with unknown function

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    31848140..31875159 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009299559.4 → XP_009297834.1  LIM domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8M3AQP1
    Conserved Domains (1) summary
    cd09486
    Location:44 → 96
    LIM_Eplin_like_1; a LIM domain subfamily on a group of proteins with unknown function

RNA

  1. XR_011008668.1 RNA Sequence

  2. XR_011008666.1 RNA Sequence

  3. XR_011008664.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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