U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

crtac1a cartilage acidic protein 1a [ Danio rerio (zebrafish) ]

Gene ID: 559626, updated on 9-Dec-2024

Summary

Go to the top of the page Help
Official Symbol
crtac1aprovided by ZNC
Official Full Name
cartilage acidic protein 1aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-9704
See related
Ensembl:ENSDARG00000059826 AllianceGenome:ZFIN:ZDB-GENE-030131-9704
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
ASPIP; cb184; crtac1; sb:cb184; zgc:165343
Summary
Predicted to be involved in axonal fasciculation. Is expressed in floor plate. Orthologous to human CRTAC1 (cartilage acidic protein 1). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See crtac1a in Genome Data Viewer
Location:
chromosome: 1
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (54933805..54947601, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (54256936..54269969, complement)

Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene zinc finger, FYVE domain containing 27 Neighboring gene golgin A7 family, member Ba Neighboring gene R3H domain and coiled-coil containing 1-like Neighboring gene KH-type splicing regulatory protein

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. CRTAC1 homolog proteins are conserved from cyanobacteria to man and secreted by the teleost fish pituitary gland. Redruello B, et al. Gene, 2010 May 15. PMID 20171266
  2. Cartilage Acidic Protein a Novel Therapeutic Factor to Improve Skin Damage Repair? Félix RC, et al. Mar Drugs, 2021 Sep 25. PMID 34677440, Free PMC Article
  3. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
  4. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  5. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

General protein information

Go to the top of the page Help
Preferred Names
cartilage acidic protein 1a
Names
cartilage acidic protein 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001080178.1 → NP_001073647.1  cartilage acidic protein 1a precursor

    See identical proteins and their annotated locations for NP_001073647.1

    Status: PROVISIONAL

    Source sequence(s)
    DQ351708
    UniProtKB/TrEMBL
    A0A8M1NBG8, A1XF92, E7EYQ8
    Related
    ENSDARP00000111754.2, ENSDART00000129710.4
    Conserved Domains (2) summary
    pfam07593
    Location:445 → 496
    UnbV_ASPIC; ASPIC and UnbV
    pfam13517
    Location:287 → 348
    VCBS; Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007112.7 Reference GRCz11 Primary Assembly

    Range
    54933805..54947601 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021475062.2 → XP_021330737.1  cartilage acidic protein 1a isoform X1

    UniProtKB/TrEMBL
    A0A8M9Q5Y3
    Conserved Domains (2) summary
    pfam07593
    Location:445 → 496
    UnbV_ASPIC; ASPIC and UnbV
    pfam13517
    Location:287 → 348
    VCBS; Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella

  2. XM_021475056.2 → XP_021330731.1  cartilage acidic protein 1a isoform X1

    UniProtKB/TrEMBL
    A0A8M9Q5Y3
    Conserved Domains (2) summary
    pfam07593
    Location:445 → 496
    UnbV_ASPIC; ASPIC and UnbV
    pfam13517
    Location:287 → 348
    VCBS; Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella

  3. XM_021475068.2 → XP_021330743.1  cartilage acidic protein 1a isoform X2

    UniProtKB/TrEMBL
    A0A8M9PUJ9
    Conserved Domains (2) summary
    pfam07593
    Location:445 → 496
    UnbV_ASPIC; ASPIC and UnbV
    pfam13517
    Location:287 → 348
    VCBS; Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella

  4. XM_005160175.5 → XP_005160232.1  cartilage acidic protein 1a isoform X3

    See identical proteins and their annotated locations for XP_005160232.1

    UniProtKB/TrEMBL
    A0A8M2B710
    Conserved Domains (2) summary
    pfam07593
    Location:445 → 496
    UnbV_ASPIC; ASPIC and UnbV
    pfam13517
    Location:287 → 348
    VCBS; Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools