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ifi35 interferon-induced protein 35 [ Danio rerio (zebrafish) ]

Gene ID: 559610, updated on 9-Dec-2024

Summary

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Official Symbol
ifi35provided by ZNC
Official Full Name
interferon-induced protein 35provided by ZNC
Primary source
ZFIN:ZDB-GENE-100311-2
See related
Ensembl:ENSDARG00000075643 AllianceGenome:ZFIN:ZDB-GENE-100311-2
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to be active in nucleus. Orthologous to human IFI35 (interferon induced protein 35). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
human mouse all
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Genomic context

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See ifi35 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (29934804..29948955)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (29810950..29818113)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene RUN domain containing 1 Neighboring gene granulin a antisense Neighboring gene granulin a Neighboring gene branched chain amino-acid transaminase 2, mitochondrial Neighboring gene hydroxysteroid (17-beta) dehydrogenase 14

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Sample Preparation and Analysis of RNASeq-based Gene Expression Data from Zebrafish. Hostelley TL, et al. J Vis Exp, 2017 Oct 27. PMID 29155729, Free PMC Article
  2. Contrasted innate responses to two viruses in zebrafish: insights into the ancestral repertoire of vertebrate IFN-stimulated genes. Briolat V, et al. J Immunol, 2014 May 1. PMID 24683187
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
interferon-induced 35 kDa protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001386657.1 → NP_001373586.1  interferon-induced 35 kDa protein

    Status: VALIDATED

    Source sequence(s)
    CR384107
    UniProtKB/TrEMBL
    A0A8N7T7D6
    Related
    ENSDARP00000101080.3, ENSDART00000113889.5
    Conserved Domains (4) summary
    COG1842
    Location:17 → 118
    PspA; Phage shock protein A [Transcription, Signal transduction mechanisms]
    pfam07292
    Location:259 → 345
    NID; Nmi/IFP 35 domain (NID)
    cd12545
    Location:212 → 290
    RRM_IN35; RNA recognition motif in interferon-induced 35 kDa protein (IFP 35) and similar proteins
    cl17169
    Location:135 → 176
    RRM_SF; RNA recognition motif (RRM) superfamily

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    29934804..29948955
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068217208.1 → XP_068073309.1  interferon-induced 35 kDa protein isoform X1

    UniProtKB/TrEMBL
    A0A8N7T7D6
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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