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swt1 SWT1 RNA endoribonuclease homolog [ Danio rerio (zebrafish) ]

Gene ID: 559432, updated on 4-Jan-2025

Summary

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Official Symbol
swt1provided by ZNC
Official Full Name
SWT1 RNA endoribonuclease homologprovided by ZNC
Primary source
ZFIN:ZDB-GENE-041015-373
See related
Ensembl:ENSDARG00000094010 AllianceGenome:ZFIN:ZDB-GENE-041015-373
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
wu:fb81g09; si:dkeyp-11g8.2; si:dkeyp-11g8.4
Summary
Orthologous to human SWT1 (SWT1 RNA endoribonuclease homolog). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
human mouse all
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Genomic context

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See swt1 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (34343651..34404780, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (34440291..34485489, complement)

Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene hemicentin 1 Neighboring gene influenza virus NS1A binding protein a Neighboring gene tRNA methyltransferase 1-like Neighboring gene niban apoptosis regulator 1a Neighboring gene kinesin-associated protein 3a Neighboring gene N-terminal Xaa-Pro-Lys N-methyltransferase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
transcriptional protein SWT1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007131.7 Reference GRCz11 Primary Assembly

    Range
    34343651..34404780 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068215667.1 → XP_068071768.1  transcriptional protein SWT1 isoform X1

    UniProtKB/TrEMBL
    A0A8M9P2Z5

  2. XM_009294796.4 → XP_009293071.1  transcriptional protein SWT1 isoform X1

    See identical proteins and their annotated locations for XP_009293071.1

    UniProtKB/TrEMBL
    A0A8M9P2Z5
    Conserved Domains (1) summary
    cd09880
    Location:467 → 608
    PIN_Smg5-Smg6-like; PIN domain

  3. XM_017352631.3 → XP_017208120.1  transcriptional protein SWT1 isoform X3

    UniProtKB/TrEMBL
    A0A8M6Z2T3

  4. XM_009294798.4 → XP_009293073.1  transcriptional protein SWT1 isoform X2

    UniProtKB/TrEMBL
    A0A8M3ATD3
    Related
    ENSDARP00000113234.2, ENSDART00000133593.4
    Conserved Domains (1) summary
    cd09880
    Location:467 → 608
    PIN_Smg5-Smg6-like; PIN domain

  5. XM_021468647.2 → XP_021324322.1  transcriptional protein SWT1 isoform X1

    UniProtKB/TrEMBL
    A0A8M9P2Z5
    Conserved Domains (1) summary
    cd09880
    Location:467 → 608
    PIN_Smg5-Smg6-like; PIN domain
Nucleotide Protein Strain
Heading Accession and Version

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