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lrrc71 leucine rich repeat containing 71 [ Danio rerio (zebrafish) ]

Gene ID: 558774, updated on 9-Dec-2024

Summary

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Official Symbol
lrrc71provided by ZNC
Official Full Name
leucine rich repeat containing 71provided by ZNC
Primary source
ZFIN:ZDB-GENE-060503-892
See related
Ensembl:ENSDARG00000036412 AllianceGenome:ZFIN:ZDB-GENE-060503-892
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:ch211-81a5.5
Summary
Orthologous to human LRRC71 (leucine rich repeat containing 71). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
human mouse all
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Genomic context

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See lrrc71 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (9091656..9107063)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (9172747..9188325)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene ring finger protein 115b Neighboring gene ash1 (absent, small, or homeotic)-like (Drosophila) Neighboring gene SET domain bifurcated histone lysine methyltransferase 1a Neighboring gene CDC-like kinase 2a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
leucine-rich repeat-containing protein 71
Names
leucine-rich repeat-containing protein 71-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001044874.2 → NP_001038339.1  leucine-rich repeat-containing protein 71

    See identical proteins and their annotated locations for NP_001038339.1

    Status: PROVISIONAL

    Source sequence(s)
    BC134854
    UniProtKB/TrEMBL
    A4IFZ6, Q1L8U9
    Related
    ENSDARP00000052897.7, ENSDART00000052898.9
    Conserved Domains (2) summary
    cd00116
    Location:71 → 251
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:116 → 136
    LRR_RI; leucine-rich repeat [structural motif]

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    9091656..9107063
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009294045.4 → XP_009292320.1  leucine-rich repeat-containing protein 71 isoform X1

    UniProtKB/TrEMBL
    A0A8M3AVD0
    Conserved Domains (2) summary
    cd00116
    Location:71 → 251
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:116 → 136
    LRR_RI; leucine-rich repeat [structural motif]

  2. XM_005159435.4 → XP_005159492.1  leucine-rich repeat-containing protein 71 isoform X2

    UniProtKB/TrEMBL
    A0A8M2B5Z2
    Conserved Domains (2) summary
    cd00116
    Location:71 → 251
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:116 → 136
    LRR_RI; leucine-rich repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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