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oxnad1 oxidoreductase NAD-binding domain containing 1 [ Danio rerio (zebrafish) ]

Gene ID: 558500, updated on 9-Dec-2024

Summary

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Official Symbol
oxnad1provided by ZNC
Official Full Name
oxidoreductase NAD-binding domain containing 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-060503-199
See related
Ensembl:ENSDARG00000062664 AllianceGenome:ZFIN:ZDB-GENE-060503-199
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:ch211-155k24.7
Summary
Predicted to enable oxidoreductase activity. Orthologous to human OXNAD1 (oxidoreductase NAD binding domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
human mouse all
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Genomic context

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See oxnad1 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (20274512..20294540)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (20690168..20710303)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene insulin-like growth factor 2 mRNA binding protein 3 Neighboring gene glycoprotein (transmembrane) nmb Neighboring gene raftlin, lipid raft linker 1a Neighboring gene deleted in azoospermia-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
oxidoreductase NAD-binding domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001110456.1 → NP_001103926.1  oxidoreductase NAD-binding domain-containing protein 1

    See identical proteins and their annotated locations for NP_001103926.1

    Status: PROVISIONAL

    Source sequence(s)
    BC134194
    UniProtKB/Swiss-Prot
    A3KP77
    Related
    ENSDARP00000125618.1, ENSDART00000151237.2
    Conserved Domains (2) summary
    cd00322
    Location:34 → 267
    FNR_like; Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport ...
    COG0543
    Location:24 → 250
    Mcr1; NAD(P)H-flavin reductase [Coenzyme transport and metabolism, Energy production and conversion]

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    20274512..20294540
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005170040.5 → XP_005170097.1  oxidoreductase NAD-binding domain-containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_005170097.1

    UniProtKB/TrEMBL
    A0A8M2BHE3, I3ISI1
    Related
    ENSDARP00000085293.5, ENSDART00000090860.7
    Conserved Domains (2) summary
    cd00322
    Location:70 → 303
    FNR_like; Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport ...
    COG0543
    Location:60 → 286
    Mcr1; NAD(P)H-flavin reductase [Coenzyme transport and metabolism, Energy production and conversion]

  2. XM_005170041.5 → XP_005170098.1  oxidoreductase NAD-binding domain-containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_005170098.1

    UniProtKB/TrEMBL
    A0A8M2BHE3, I3ISI1
    Related
    ENSDARP00000125864.1, ENSDART00000151693.3
    Conserved Domains (2) summary
    cd00322
    Location:70 → 303
    FNR_like; Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport ...
    COG0543
    Location:60 → 286
    Mcr1; NAD(P)H-flavin reductase [Coenzyme transport and metabolism, Energy production and conversion]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A3KP77.1 GenPept UniProtKB/Swiss-Prot:A3KP77

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