urm1 ubiquitin related modifier 1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: urm1provided by ZNC
Official Full Name: ubiquitin related modifier 1provided by ZNC
Primary source: ZFIN:ZDB-GENE-091204-300
See related: Ensembl:ENSDARG00000091198 AllianceGenome:ZFIN:ZDB-GENE-091204-300
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: si:dkeyp-68f6.2
Summary: Predicted to enable protein tag activity. Predicted to be involved in protein urmylation. Predicted to act upstream of or within tRNA processing. Predicted to be located in cytosol. Predicted to be active in nucleus. Orthologous to human URM1 (ubiquitin related modifier 1). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 10

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	10	NC_007121.7 (10313024..10326027)
105	previous assembly	GRCz10 (GCF_000002035.5)	10	NC_007121.6 (10354786..10367789)

Chromosome 10 - NC_007121.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables protein tag activity	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in protein urmylation	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within tRNA processing	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within tRNA thio-modification	IEA Inferred from Electronic Annotation more info
involved_in tRNA thio-modification	IEA Inferred from Electronic Annotation more info
involved_in tRNA wobble uridine modification	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in cytosol	IEA Inferred from Electronic Annotation more info
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: ubiquitin-related modifier 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001328092.1 → NP_001315021.1 ubiquitin-related modifier 1

Status: VALIDATED

Source sequence(s)

BX323065

UniProtKB/TrEMBL

A0A8M1P9X0, F2Z4T6

Related

ENSDARP00000120675.1, ENSDART00000142895.3

Conserved Domains (1) summary

pfam09138
Location:9 → 101

Urm1; Urm1 (Ubiquitin related modifier)

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007121.7 Reference GRCz11 Primary Assembly

Range

10313024..10326027

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_021479180.2 → XP_021334855.1 ubiquitin-related modifier 1 isoform X1

UniProtKB/TrEMBL

A0A8M9QKQ6

Related

ENSDARP00000108653.2, ENSDART00000129952.3

Conserved Domains (1) summary

pfam09138
Location:9 → 100

Urm1; Urm1 (Ubiquitin related modifier)