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colgalt2a collagen beta(1-O)galactosyltransferase 2a [ Danio rerio (zebrafish) ]

Gene ID: 558068, updated on 19-Jan-2025

Summary

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Official Symbol
colgalt2aprovided by ZNC
Official Full Name
collagen beta(1-O)galactosyltransferase 2aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-070705-32
See related
Ensembl:ENSDARG00000078299 AllianceGenome:ZFIN:ZDB-GENE-070705-32
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:ch211-13f8.2
Summary
Predicted to enable glycosyltransferase activity. Orthologous to human COLGALT2 (collagen beta(1-O)galactosyltransferase 2). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
all
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Genomic context

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See colgalt2a in Genome Data Viewer
Location:
chromosome: 2
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (7213207..7235296)
105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (7341628..7361435)

Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene ring finger and CCCH-type domains 1b Neighboring gene si:ch211-13f8.1 Neighboring gene si:dkeyp-106c3.1 Neighboring gene zgc:153115 Neighboring gene si:dkeyp-106c3.2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Bioinformatic Analysis of Roquin Family Reveals Their Potential Role in Immune System. Li X, et al. Int J Mol Sci, 2024 May 28. PMID 38892048, Free PMC Article
  2. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
procollagen galactosyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007113.7 Reference GRCz11 Primary Assembly

    Range
    7213207..7235296
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017352576.3 → XP_017208065.2  procollagen galactosyltransferase 2

    UniProtKB/TrEMBL
    A0A8M6YUW4
    Related
    ENSDARP00000117090.1, ENSDART00000146547.2
    Conserved Domains (2) summary
    cd06532
    Location:332 → 515
    Glyco_transf_25; Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of ...
    cl11394
    Location:51 → 164
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein Strain
Heading Accession and Version

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