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utp20 UTP20 small subunit processome component [ Danio rerio (zebrafish) ]

Gene ID: 557849, updated on 9-Dec-2024

Summary

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Official Symbol
utp20provided by ZNC
Official Full Name
UTP20 small subunit processome componentprovided by ZNC
Primary source
ZFIN:ZDB-GENE-080225-38
See related
Ensembl:ENSDARG00000099280 AllianceGenome:ZFIN:ZDB-GENE-080225-38
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
im:7159098; wu:fb83c08
Summary
Predicted to be part of 90S preribosome and small-subunit processome. Predicted to be active in nucleolus. Is expressed in immature eye; myotome; nervous system; pharyngeal arch; and somite. Orthologous to human UTP20 (UTP20 small subunit processome component). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
human mouse all
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Genomic context

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See utp20 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
62
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (5867907..5910252)
105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (5859252..5901678)

Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene ubiquitin specific peptidase 18 Neighboring gene LYR motif containing 5a Neighboring gene solute carrier family 5 member 8 Neighboring gene uncharacterized LOC137491391 Neighboring gene ADP-ribosylation factor-like 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
part_of 90S preribosome IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleolus IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of small-subunit processome IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
small subunit processome component 20 homolog
Names
UTP20 small subunit (SSU) processome component
UTP20, small subunit (SSU) processome component, homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007115.7 Reference GRCz11 Primary Assembly

    Range
    5867907..5910252
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009300013.4 → XP_009298288.1  small subunit processome component 20 homolog

    UniProtKB/TrEMBL
    A0A0R4IQW7, A0A8M3AYI7
    Related
    ENSDARP00000138699.1, ENSDART00000166591.2
    Conserved Domains (1) summary
    pfam07539
    Location:916 → 1539
    DRIM; Down-regulated in metastasis
Nucleotide Protein Strain
Heading Accession and Version

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