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si:ch211-250g4.3 si:ch211-250g4.3 [ Danio rerio (zebrafish) ]

Gene ID: 557772, updated on 3-Dec-2024

Summary

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Official Symbol
si:ch211-250g4.3provided by ZNC
Official Full Name
si:ch211-250g4.3provided by ZNC
Primary source
ZFIN:ZDB-GENE-060503-506
See related
AllianceGenome:ZFIN:ZDB-GENE-060503-506
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
im:7151086
Orthologs
all
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Genomic context

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See si:ch211-250g4.3 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (37509663..37568630)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (37922507..37980098)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene discs, large (Drosophila) homolog-associated protein 3 Neighboring gene uncharacterized LOC137488539 Neighboring gene interleukin enhancer binding factor 2 Neighboring gene thrombospondin, type I, domain containing 7Aa Neighboring gene neurexophilin 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Poly(I:C)-exposed zebrafish shows autism-like behaviors which are ameliorated by fabp2 gene knockout. Wu J, et al. Front Mol Neurosci, 2022. PMID 36683854, Free PMC Article
  2. Identification of vascular and hematopoietic genes downstream of etsrp by deep sequencing in zebrafish. Gomez G, et al. PLoS One, 2012. PMID 22438865, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
titin homolog; uncharacterized protein LOC557772

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    37509663..37568630
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_680892.10 → XP_685984.6  titin homolog

    UniProtKB/TrEMBL
    A0A8M2B6A4, A0A8M9PRW7, A0A8N7T6X5
    Conserved Domains (8) summary
    COG0419
    Location:3116 → 3744
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG1196
    Location:11003 → 11742
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    COG1340
    Location:12549 → 12821
    COG1340; Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]
    COG4942
    Location:7473 → 7684
    EnvC; Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:13824 → 14665
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    TIGR04523
    Location:5214 → 5908
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    pfam07851
    Location:4567 → 4658
    TMPIT; TMPIT-like protein
    pfam13166
    Location:4979 → 5317
    AAA_13; AAA domain
Nucleotide Protein Strain
Heading Accession and Version

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