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btbd9 BTB (POZ) domain containing 9 [ Danio rerio (zebrafish) ]

Gene ID: 557659, updated on 9-Dec-2024

Summary

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Official Symbol
btbd9provided by ZNC
Official Full Name
BTB (POZ) domain containing 9provided by ZNC
Primary source
ZFIN:ZDB-GENE-040704-39
See related
Ensembl:ENSDARG00000068983 AllianceGenome:ZFIN:ZDB-GENE-040704-39
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:91846; wu:fd16d11
Summary
Acts upstream of or within brain development. Predicted to be active in cytoplasm. Orthologous to human BTBD9 (BTB domain containing 9). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
human mouse all
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Genomic context

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See btbd9 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (44763414..44782442, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (44626931..44645511, complement)

Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene zinc finger, AN1-type domain 3 Neighboring gene transfer RNA valine (anticodon CAC) Neighboring gene transfer RNA valine (anticodon AAC) Neighboring gene glyoxalase 1 Neighboring gene oocyte zinc finger protein XlCOF19

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Identification and characterization of miRNAs involved in cold acclimation of zebrafish ZF4 cells. Ji X, et al. PLoS One, 2020. PMID 31923196, Free PMC Article
  2. Large-scale discovery of novel genetic causes of developmental disorders. Deciphering Developmental Disorders Study. Nature, 2015 Mar 12. PMID 25533962, Free PMC Article
  3. Anti-apoptotic effects of IGF-I on mortality and dysmorphogenesis in tbx5-deficient zebrafish embryos. Tsai TC, et al. BMC Dev Biol, 2018 Mar 5. PMID 29506474, Free PMC Article
  4. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
  5. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC91846

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in adult locomotory behavior IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in anatomical structure morphogenesis IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within brain development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in circadian behavior IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in modulation of chemical synaptic transmission IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
BTB/POZ domain-containing protein 9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001002198.1 → NP_001002198.1  BTB/POZ domain-containing protein 9

    See identical proteins and their annotated locations for NP_001002198.1

    Status: PROVISIONAL

    Source sequence(s)
    BC074031
    UniProtKB/TrEMBL
    Q6GML3
    Related
    ENSDARP00000090762.4, ENSDART00000099990.5
    Conserved Domains (4) summary
    smart00225
    Location:37 → 137
    BTB; Broad-Complex, Tramtrack and Bric a brac
    cd14822
    Location:137 → 195
    BACK_BTBD9_like; BACK-like Domain C-terminal to BTB in BTB/POZ domain-containing protein 9 and similar proteins
    pfam00651
    Location:33 → 133
    BTB; BTB/POZ domain
    pfam00754
    Location:324 → 406
    F5_F8_type_C; F5/8 type C domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007124.7 Reference GRCz11 Primary Assembly

    Range
    44763414..44782442 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021480593.2 → XP_021336268.1  BTB/POZ domain-containing protein 9 isoform X1

    UniProtKB/TrEMBL
    A0A8M9Q9R1
    Conserved Domains (4) summary
    cd14822
    Location:137 → 195
    BACK_BTBD9_like; BACK-like Domain C-terminal to BTB in BTB/POZ domain-containing protein 9 and similar proteins
    pfam00651
    Location:33 → 137
    BTB; BTB/POZ domain
    pfam00754
    Location:324 → 406
    F5_F8_type_C; F5/8 type C domain
    cl23730
    Location:473 → 544
    F5_F8_type_C; F5/8 type C domain
Nucleotide Protein Strain
Heading Accession and Version

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