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si:ch73-299h12.9 si:ch73-299h12.9 [ Danio rerio (zebrafish) ]

Gene ID: 557562, updated on 9-Dec-2024

Summary

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Official Symbol
si:ch73-299h12.9provided by ZNC
Official Full Name
si:ch73-299h12.9provided by ZNC
Primary source
ZFIN:ZDB-GENE-081031-87
See related
AllianceGenome:ZFIN:ZDB-GENE-081031-87
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See si:ch73-299h12.9 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (2359244..2360908, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (2333402..2340252, complement)

Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene si:ch73-299h12.8 Neighboring gene uncharacterized LOC110438216 Neighboring gene zinc finger protein OZF Neighboring gene si:ch211-241b2.4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
gastrula zinc finger protein XlCGF57.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007132.7 Reference GRCz11 Primary Assembly

    Range
    2359244..2360908 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_680648.9 → XP_685740.3  gastrula zinc finger protein XlCGF57.1

    UniProtKB/TrEMBL
    A0A8N7UQR0
    Conserved Domains (3) summary
    COG5048
    Location:158 → 279
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:76 → 96
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:88 → 113
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein Strain
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