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btbd10b BTB (POZ) domain containing 10b [ Danio rerio (zebrafish) ]

Gene ID: 557247, updated on 9-Dec-2024

Summary

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Official Symbol
btbd10bprovided by ZNC
Official Full Name
BTB (POZ) domain containing 10bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-080104-5
See related
Ensembl:ENSDARG00000020252 AllianceGenome:ZFIN:ZDB-GENE-080104-5
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
id:ibd2027
Summary
Predicted to be involved in phosphatidylinositol 3-kinase/protein kinase B signal transduction. Predicted to be active in cytoplasm. Is expressed in somite. Orthologous to human BTBD10 (BTB domain containing 10). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
human mouse all
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Genomic context

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See btbd10b in Genome Data Viewer
Location:
chromosome: 7
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (66112196..66133748, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (65888546..65910107, complement)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101883932 Neighboring gene basic helix-loop-helix ARNT like 1b Neighboring gene parathyroid hormone 1b Neighboring gene uncharacterized LOC108190816

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Automated identification of conserved synteny after whole-genome duplication. Catchen JM, et al. Genome Res, 2009 Aug. PMID 19465509, Free PMC Article
  2. Impact of selenium co-administration on methylmercury exposed eleutheroembryos and adult zebrafish (Danio rerio): Changes in bioaccumulation and gene expression. Cabezas-Sanchez P, et al. Chemosphere, 2019 Dec. PMID 31319311
  3. Comparative genomic analysis of teleost fish bmal genes. Wang H. Genetica, 2009 May. PMID 18850331
  4. Molecular evolution and functional divergence of zebrafish (Danio rerio) cryptochrome genes. Liu C, et al. Sci Rep, 2015 Jan 29. PMID 25630924, Free PMC Article
  5. A gene expression screen in zebrafish embryogenesis. Kudoh T, et al. Genome Res, 2001 Dec. PMID 11731487

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in phosphatidylinositol 3-kinase/protein kinase B signal transduction IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
BTB/POZ domain-containing protein 10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    66112196..66133748 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_682338.9 → XP_687430.2  BTB/POZ domain-containing protein 10

    UniProtKB/TrEMBL
    A0A8N7TCZ2, X1WDG9
    Related
    ENSDARP00000128268.1, ENSDART00000154961.2
    Conserved Domains (2) summary
    smart00225
    Location:121 → 209
    BTB; Broad-Complex, Tramtrack and Bric a brac
    pfam16017
    Location:153 → 382
    BTB_3; BTB/POZ domain

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394713.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    247159..267716 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021472027.2 → XP_021327702.1  BTB/POZ domain-containing protein 10

    UniProtKB/TrEMBL
    A0A8M9P9S6
    Conserved Domains (1) summary
    pfam16017
    Location:119 → 224
    BTB_3; BTB/POZ domain
Nucleotide Protein Strain
Heading Accession and Version

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