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ccdc87 coiled-coil domain containing 87 [ Danio rerio (zebrafish) ]

Gene ID: 556936, updated on 4-Jan-2025

Summary

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Official Symbol
ccdc87provided by ZNC
Official Full Name
coiled-coil domain containing 87provided by ZNC
Primary source
ZFIN:ZDB-GENE-041210-118
See related
Ensembl:ENSDARG00000045683 AllianceGenome:ZFIN:ZDB-GENE-041210-118
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
im:6912536; im:7151541; si:dkeyp-81f3.1; si:ch211-266a5.1
Summary
Orthologous to human CCDC87 (coiled-coil domain containing 87). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
human mouse all
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Genomic context

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See ccdc87 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (13615721..13624294)
105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (13616884..13619104)

Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene transportin 3 Neighboring gene si:dkeyp-81f3.4 Neighboring gene interferon regulatory factor 5 Neighboring gene patatin-like phospholipase domain containing 8 Neighboring gene neuronal cell adhesion molecule a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
coiled-coil domain-containing protein 87

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007115.7 Reference GRCz11 Primary Assembly

    Range
    13615721..13624294
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068220754.1 → XP_068076855.1  coiled-coil domain-containing protein 87

    Related
    ENSDARP00000115444.1, ENSDART00000141395.3

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001044817.2: Suppressed sequence

    Description
    NM_001044817.2: This RefSeq was suppressed temporarily based on the calculation that the encoded protein was shorter than proteins from the putative ortholog from human: CCDC87 (GeneID:55231).
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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