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crybg1a crystallin beta-gamma domain containing 1a [ Danio rerio (zebrafish) ]

Gene ID: 556848, updated on 4-Jan-2025

Summary

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Official Symbol
crybg1aprovided by ZNC
Official Full Name
crystallin beta-gamma domain containing 1aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-041008-100
See related
Ensembl:ENSDARG00000031782 AllianceGenome:ZFIN:ZDB-GENE-041008-100
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
aim1a; im:7137367; si:ch73-374a13.2
Summary
Orthologous to human CRYBG1 (crystallin beta-gamma domain containing 1). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
human mouse all
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Genomic context

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See crybg1a in Genome Data Viewer
Location:
chromosome: 17
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (25481571..25550243)
105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (25463133..25531791)

Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene serine/arginine repetitive matrix 1 Neighboring gene chloride intracellular channel 4 Neighboring gene reticulon 4 interacting protein 1 Neighboring gene si:ch211-214p16.1 Neighboring gene glutaminyl-tRNA amidotransferase subunit QRSL1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Lens defects in Astyanax mexicanus Cavefish: evolution of crystallins and a role for alphaA-crystallin. Hinaux H, et al. Dev Neurobiol, 2015 May. PMID 25348293
  2. Single cell transcriptomics of the developing zebrafish lens and identification of putative controllers of lens development. Farnsworth DR, et al. Exp Eye Res, 2021 May. PMID 33705730, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
absent in melanoma 1 protein; beta/gamma crystallin domain-containing protein 1
Names
absent in melanoma 1a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007128.7 Reference GRCz11 Primary Assembly

    Range
    25481571..25550243
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_679769.10 → XP_684861.3  beta/gamma crystallin domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8N7TD83, F1QAH5
    Related
    ENSDARP00000115118.2, ENSDART00000139451.4
    Conserved Domains (4) summary
    pfam09528
    Location:236 → 765
    Ehrlichia_rpt; Ehrlichia tandem repeat (Ehrlichia_rpt)
    cd00161
    Location:2743 → 2839
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00030
    Location:2340 → 2434
    Crystall; Beta/Gamma crystallin
    pfam00652
    Location:2711 → 2838
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_005158549.5 → XP_005158606.1  beta/gamma crystallin domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8M2B5F6, F1QE29
    Related
    ENSDARP00000041720.5, ENSDART00000041721.6
    Conserved Domains (4) summary
    pfam09528
    Location:87 → 616
    Ehrlichia_rpt; Ehrlichia tandem repeat (Ehrlichia_rpt)
    cd00161
    Location:2594 → 2690
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00030
    Location:2191 → 2285
    Crystall; Beta/Gamma crystallin
    pfam00652
    Location:2562 → 2689
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein Strain
Heading Accession and Version

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