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LOC556735 solute carrier organic anion transporter family member 5A1 [ Danio rerio (zebrafish) ]

Gene ID: 556735, updated on 12-Sep-2024

Summary

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Gene symbol
LOC556735
Gene description
solute carrier organic anion transporter family member 5A1
See related
Ensembl:ENSDARG00000071685
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
human mouse all
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Genomic context

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See LOC556735 in Genome Data Viewer
Location:
chromosome: 24
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (19591907..19699318)
105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (19447467..19553088)

Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene zgc:162928 Neighboring gene sulfatase 1 Neighboring gene cysteine-serine-rich nuclear protein 1b Neighboring gene LIM domain-containing protein Neighboring gene solute carrier family 22 member 13b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
solute carrier organic anion transporter family member 5A1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007135.7 Reference GRCz11 Primary Assembly

    Range
    19591907..19699318
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_679609.9 → XP_684701.3  solute carrier organic anion transporter family member 5A1

    UniProtKB/TrEMBL
    A0A8N7UQP5, E7F2I7
    Related
    ENSDARP00000126538.1, ENSDART00000152026.2
    Conserved Domains (3) summary
    cd06174
    Location:146 → 545
    MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
    cd01330
    Location:565 → 619
    KAZAL_SLC21; The kazal-type serine protease inhibitor domain has been detected in an extracellular loop region of solute carrier 21 (SLC21) family members (organic anion transporters) , which may regulate the specificity of anion uptake. The KAZAL_SLC21 domain is a ...
    pfam03137
    Location:143 → 748
    OATP; Organic Anion Transporter Polypeptide (OATP) family
Nucleotide Protein
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