ccdc167 coiled-coil domain containing 167 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: ccdc167provided by ZNC
Official Full Name: coiled-coil domain containing 167provided by ZNC
Primary source: ZFIN:ZDB-GENE-041210-79
See related: Ensembl:ENSDARG00000045850 AllianceGenome:ZFIN:ZDB-GENE-041210-79
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: si:ch211-214j24.7
Summary: Predicted to be located in membrane. Orthologous to human CCDC167 (coiled-coil domain containing 167). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 4

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	4	NC_007115.7 (5255040..5256861)
105	previous assembly	GRCz10 (GCF_000002035.5)	4	NC_007115.6 (5246470..5248291)

Chromosome 4 - NC_007115.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: coiled-coil domain-containing protein 167

Names: transmembrane and coiled-coil domain-containing protein C6orf129 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001328596.1 → NP_001315525.1 coiled-coil domain-containing protein 167

Status: VALIDATED

Source sequence(s)

BX323558, EH467982, EH543436

UniProtKB/Swiss-Prot

A3KNS5, B0S617, Q5RHZ2

Related

ENSDARP00000118096.1, ENSDART00000137966.3

Conserved Domains (1) summary

pfam15188
Location:13 → 93

CCDC-167; Coiled-coil domain-containing protein 167

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007115.7 Reference GRCz11 Primary Assembly

Range

5255040..5256861

Download

GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

NM_001025484.2: Suppressed sequence

Description

NM_001025484.2: This RefSeq was removed because currently there is insufficient support for the transcript.